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ASM
2010
ASM
13 years 10 months ago
Starting B Specifications from Use Cases
The B method is one of the most used formal methods, when reactive systems is under question, due to good support for refinement. However, obtaining the formal model from requireme...
Thiago C. de Sousa, Aryldo G. Russo
ASM
2010
ASM
13 years 10 months ago
Refinement-Animation for Event-B - Towards a Method of Validation
We provide a detailed description of refinement in Event-B, both as a contribution in itself and as a foundation for the approach to simultaneous animation of multiple levels of re...
Stefan Hallerstede, Michael Leuschel, Daniel Plagg...
ASM
2010
ASM
13 years 11 months ago
Development of a Synchronous Subset of AADL
Mamoun Filali-Amine, Julia L. Lawall
RECOMB
2000
Springer
13 years 11 months ago
Early eukaryote evolution based on mitochondrial gene order breakpoints
We present a general heuristicfor the median problem for induced breakpoints on genomes with unequal gene content and incorporate this into a routine for estimating optimal gene o...
David Sankoff, David Bryant, Mélanie Deneau...
RECOMB
2000
Springer
13 years 11 months ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
RECOMB
2000
Springer
13 years 11 months ago
Mutation-tolerant protein identification by mass-spectrometry
Pavel A. Pevzner, Vlado Dancík, Chris L. Ta...
RECOMB
2000
Springer
13 years 11 months ago
Using Bayesian networks to analyze expression data
DNA hybridization arrays simultaneously measure the expression level for thousands of genes. These measurements provide a "snapshot" of transcription levels within the c...
Nir Friedman, Michal Linial, Iftach Nachman, Dana ...
RECOMB
2000
Springer
13 years 11 months ago
Contig selection in physical mapping
In physical mapping, one orders a set of genetic landmarks or a library of cloned fragments of DNA according to their position in the genome. Our approach to physical mapping divi...
Steffen Heber, Jens Stoye, Jörg D. Hoheisel, ...
RECOMB
2000
Springer
13 years 11 months ago
Multiple maxima of likelihood in phylogenetic trees: an analytic approach
Benny Chor, Michael D. Hendy, Barbara R. Holland, ...
RECOMB
2000
Springer
13 years 11 months ago
Universal DNA tag systems: a combinatorial design scheme
Custom-designed DNA arrays offer the possibility of simultaneously monitoring thousands of hybridization reactions. These arrays show great potential for many medical and scientif...
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, ...