Computational Biology

29

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RECOMB
2004
Springer

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Reconciliation problems for duplication, loss and horizontal gene transfer

14 years 12 months ago

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Pawel Górecki

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25

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RECOMB
2004
Springer

125views Computational Biology» more RECOMB 2004»

Maximum likelihood resolution of multi-block genotypes

14 years 12 months ago

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We present a new algorithm for the problems of genotype phasing and block partitioning. Our algorithm is based on a new stochastic model, and on the novel concept of probabilistic...

Gad Kimmel, Ron Shamir

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37

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RECOMB
2004
Springer

139views Computational Biology» more RECOMB 2004»

Aligning alignments exactly

14 years 12 months ago

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d abstract) John Kececioglu and Dean Starrett Department of Computer Science The University of Arizona Tucson AZ 85721, USA A basic computational problem that arises in both the...

John D. Kececioglu, Dean Starrett

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30

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RECOMB
2004
Springer

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Discovering temporal relations in molecular pathways using protein-protein interactions

14 years 12 months ago

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The availability of large-scale protein-protein interaction data provides us with many opportunities to study molecular pathways involving proteins. In this paper we propose to mi...

Martin Farach-Colton, Yang Huang, John L. L. Woolf...

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33

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RECOMB
2004
Springer

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From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles

14 years 12 months ago

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Eleazar Eskin

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28

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RECOMB
2004
Springer

94views Computational Biology» more RECOMB 2004»

14 years 12 months ago

Protein similarity from knot theory and geometric convolution

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Michael Erdmann

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46

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RECOMB
2004
Springer

168views Computational Biology» more RECOMB 2004»

Mining protein family specific residue packing patterns from protein structure graphs

14 years 12 months ago

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Finding recurring residue packing patterns, or spatial motifs, that characterize protein structural families is an important problem in bioinformatics. To this end, we apply a nov...

Jun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jac...

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34

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RECOMB
2004
Springer

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Stochastic models inspired by hybridization theory for short oligonucleotide arrays

14 years 12 months ago

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Zhijin Wu, Rafael A. Irizarry

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31

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RECOMB
2004
Springer

228views Computational Biology» more RECOMB 2004»

Perfect phylogeny and haplotype assignment

14 years 12 months ago

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This paper is concerned with the reconstruction of perfect phylogenies from binary character data with missing values, and related problems of inferring complete haplotypes from h...

Eran Halperin, Richard M. Karp

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19

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RECOMB
2004
Springer

103views Computational Biology» more RECOMB 2004»

Learning multiple evolutionary pathways from cross-sectional data

14 years 12 months ago