BMCBI
2008
14 years 16 days ago
2008
Background: This paper discusses the problem of automated annotation. It is a continuation of the previous work on the A4-algorithm (Adaptive algorithm of automated annotation) de...
BMCBI
2007
14 years 16 days ago
2007
Background: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using...
BMCBI
2007
14 years 16 days ago
2007
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
BMCBI
2008
14 years 16 days ago
2008
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
BMCBI
2008
14 years 16 days ago
2008
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
BMCBI
2010
14 years 17 days ago
2010
Background: With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public...
BMCBI
2010
14 years 17 days ago
2010
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
BMCBI
2010
14 years 17 days ago
2010
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
ICASSP
2010
IEEE
14 years 19 days ago
2010
IEEE
This paper presents a new probabilistic model for the task of image annotation. Our model, which we call sLDA-bin, extends supervised Latent Dirichlet Allocation (sLDA) model to h...
CVPR
2010
IEEE
14 years 19 days ago
2010
IEEE
We present topic-regression multi-modal Latent Dirichlet Allocation (tr-mmLDA), a novel statistical topic model for the task of image and video annotation. At the heart of our new...