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    BMCBI
    2007
    79views more  BMCBI 2007»
    Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathog
    14 years 14 days ago
    Genomic scale analysis of lateral gene transfer in Apicomplexan parasites: insights into early eukaryotic evolution, host-pathog
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    ent> <title> <p>Highlights from the Third International Society for Computational Biology (ISCB) Student Council Symposium at the Fifteenth Annual International Conf...
    Lucia Peixoto, David S. Roos
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    BMCBI
    2007
    114views more  BMCBI 2007»
    Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
    14 years 14 days ago
    Gene models from ESTs (GeneModelEST): an application on the Solanum lycopersicum genome
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    Background: The structure annotation of a genome is based either on ab initio methodologies or on similaritiy searches versus molecules that have been already annotated. Ab initio...
    Nunzio D'Agostino, Alessandra Traini, Luigi Frusci...
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    BMCBI
    2007
    153views more  BMCBI 2007»
    Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis
    14 years 14 days ago
    Analysis of nanopore detector measurements using Machine-Learning methods, with application to single-molecule kinetic analysis
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    Background: A nanopore detector has a nanometer-scale trans-membrane channel across which a potential difference is established, resulting in an ionic current through the channel ...
    Matthew Landry, Stephen Winters-Hilt
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    BMCBI
    2007
    120views more  BMCBI 2007»
    Computational analyses of eukaryotic promoters
    14 years 14 days ago
    Computational analyses of eukaryotic promoters
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    Computational analysis of eukaryotic promoters is one of the most difficult problems in computational genomics and is essential for understanding gene expression profiles and reve...
    Michael Q. Zhang
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    BMCBI
    2007
    135views more  BMCBI 2007»
    Automatic extraction of reliable regions from multiple sequence alignments
    14 years 14 days ago
    Automatic extraction of reliable regions from multiple sequence alignments
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    Background: High quality multiple alignments are crucial in the transfer of annotation from one genome to another. Multiple alignment methods strive to achieve ever increasing lev...
    Timo Lassmann, Erik L. L. Sonnhammer
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    BMCBI
    2007
    187views more  BMCBI 2007»
    BioWMS: a web-based Workflow Management System for bioinformatics
    14 years 14 days ago
    BioWMS: a web-based Workflow Management System for bioinformatics
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    Background: An in-silico experiment can be naturally specified as a workflow of activities implementing, in a standardized environment, the process of data and control analysis. A...
    Ezio Bartocci, Flavio Corradini, Emanuela Merelli,...
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    BMCBI
    2007
    87views more  BMCBI 2007»
    Preliminary nanopore cheminformatics analysis of aptamer-target binding strength
    14 years 14 days ago
    Preliminary nanopore cheminformatics analysis of aptamer-target binding strength
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    Karen Thomson, Iftekhar Amin, Eric Morales, Stephe...
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    BMCBI
    2007
    150views more  BMCBI 2007»
    Refining intra-protein contact prediction by graph analysis
    14 years 14 days ago
    Refining intra-protein contact prediction by graph analysis
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    Background: Accurate prediction of intra-protein residue contacts from sequence information will allow the prediction of protein structures. Basic predictions of such specific con...
    Milana Frenkel-Morgenstern, Rachel Magid, Eran Eya...
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    BMCBI
    2007
    149views more  BMCBI 2007»
    Robust imputation method for missing values in microarray data
    14 years 14 days ago
    Robust imputation method for missing values in microarray data
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    Background: When analyzing microarray gene expression data, missing values are often encountered. Most multivariate statistical methods proposed for microarray data analysis canno...
    Dankyu Yoon, Eun-Kyung Lee, Taesung Park
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    BMCBI
    2007
    198views more  BMCBI 2007»
    Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation
    14 years 14 days ago
    Correlation analysis reveals the emergence of coherence in the gene expression dynamics following system perturbation
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    Time course gene expression experiments are a popular means to infer co-expression. Many methods have been proposed to cluster genes or to build networks based on similarity measu...
    Nicola Neretti, Daniel Remondini, Marc Tatar, John...
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