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CSB
2005
IEEE
192views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Operon Prediction in Cyanobacteria using Comparative Genomics
In this work, we performed a comprehensive analysis of the genome organization of eight publicly available cyanobacterial genomes and of the extensively studied Escherichia coli K...
Natalia Khuri, Nikhila S. Rao
CSB
2005
IEEE
192views Bioinformatics» more  CSB 2005»
14 years 5 months ago
RNAMute: RNA Secondary Structure Mutation Analysis Tool
RNAMute is an interactive web tool written in Java that calculates the secondary structure of all single point mutations, given an RNA sequence, and organizes them into categories...
Alexander Churkin, Ornit Elgad, Oshrat Petgho, Dan...
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Reducing Gene Regulatory Networks by Decomposition
Luonan Chen, Ruiqi Wang, Kazuyuki Aihara
CSB
2005
IEEE
115views Bioinformatics» more  CSB 2005»
14 years 5 months ago
A New Clustering Strategy with Stochastic Merging and Removing Based on Kernel Functions
With hierarchical clustering methods, divisions or fusions, once made, are irrevocable. As a result, when two elements in a bottom-up algorithm are assigned to one cluster, they c...
Huimin Geng, Hesham H. Ali
CSB
2005
IEEE
149views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Combinatorial method of splice sites prediction
Predicting and proper ranking of splice sites (SS) is a challenging problem in bioinformatics and machine learning communities. Proposed method of donor and acceptor SSs predictio...
Alexander G. Churbanov, Hesham H. Ali
CSB
2005
IEEE
145views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Data Mining in situ Gene Expression Patterns at Cellular Resolution
James Carson, Christina Thaller, Musodiq Bello, Wa...
CSB
2005
IEEE
139views Bioinformatics» more  CSB 2005»
14 years 5 months ago
PLATCOM: a Platform for Computational Comparative Genomics on the Web
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
CSB
2005
IEEE
163views Bioinformatics» more  CSB 2005»
14 years 5 months ago
A symbolic approach to the simulation of biochemical models: application to circadian rhythms
Symbolic rewriting systems are gaining interest as tools for simulating biochemical dynamics. Compared to traditional methods based on differential equations, the symbolic approac...
Federico Fontana, Luca Bianco, Vincenzo Manca