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BMCBI
2007
177views more  BMCBI 2007»
13 years 11 months ago
The BioPrompt-box: an ontology-based clustering tool for searching in biological databases
Background: High-throughput molecular biology provides new data at an incredible rate, so that the increase in the size of biological databanks is enormous and very rapid. This sc...
Claudio Corsi, Paolo Ferragina, Roberto Marangoni
DKE
2006
122views more  DKE 2006»
13 years 11 months ago
Sampling, information extraction and summarisation of Hidden Web databases
Hidden Web databases maintain a collection of specialised documents, which are dynamically generated in response to users' queries. The majority of these documents are genera...
Yih-Ling Hedley, Muhammad Younas, Anne E. James, M...
DKE
2006
139views more  DKE 2006»
13 years 11 months ago
Information extraction from structured documents using k-testable tree automaton inference
Information extraction (IE) addresses the problem of extracting specific information from a collection of documents. Much of the previous work on IE from structured documents, suc...
Raymond Kosala, Hendrik Blockeel, Maurice Bruynoog...
CSDA
2006
85views more  CSDA 2006»
13 years 11 months ago
Two-way Poisson mixture models for simultaneous document classification and word clustering
An approach to simultaneous document classification and word clustering is developed using a two-way mixture model of Poisson distributions. Each document is represented by a vect...
Jia Li, Hongyuan Zha
BMCBI
2006
153views more  BMCBI 2006»
13 years 11 months ago
Automatic document classification of biological literature
Background: Document classification is a wide-spread problem with many applications, from organizing search engine snippets to spam filtering. We previously described Textpresso, ...
David Chen, Hans-Michael Müller, Paul W. Ster...
IAJIT
2008
123views more  IAJIT 2008»
13 years 11 months ago
Vectorial Information Structuring for Documents Filtering and Diffusion
: Information retrieval tries to identify relevant documents for an information need. The problems that an IR system should deal with include document indexing (which tries to extr...
Omar Nouali, Abdelghani Krinah
BMCBI
2006
69views more  BMCBI 2006»
13 years 11 months ago
Retrieval with gene queries
Background: Accuracy of document retrieval from MEDLINE for gene queries is crucially important for many applications in bioinformatics. We explore five information retrieval-base...
Aditya Kumar Sehgal, Padmini Srinivasan
CORR
2010
Springer
58views Education» more  CORR 2010»
13 years 11 months ago
Verifying Recursive Active Documents with Positive Data Tree Rewriting
This paper considers a tree-rewriting framework for modeling documents evolving through service calls. We focus on the automatic verification of properties of documents that may c...
Blaise Genest, Anca Muscholl, Zhilin Wu
41
Voted
BMCBI
2010
110views more  BMCBI 2010»
13 years 11 months ago
Concept-based query expansion for retrieving gene related publications from MEDLINE
Background: Advances in biotechnology and in high-throughput methods for gene analysis have contributed to an exponential increase in the number of scientific publications in thes...
Sérgio Matos, Joel Arrais, João Maia...
WWW
2010
ACM
13 years 11 months ago
SNDocRank: document ranking based on social networks
To improve the search results for socially-connect users, we propose a ranking framework, Social Network Document Rank (SNDocRank). This framework considers both document contents...
Liang Gou, Hung-Hsuan Chen, Jung-Hyun Kim, Xiaolon...