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NAR
2010
128views more  NAR 2010»
13 years 6 months ago
AntigenDB: an immunoinformatics database of pathogen antigens
The continuing threat of infectious disease and future pandemics, coupled to the continuous increase of drug-resistant pathogens, makes the discovery of new and better vaccines im...
Hifzur Rahman Ansari, Darren R. Flower, G. P. S. R...
BMCBI
2007
92views more  BMCBI 2007»
13 years 11 months ago
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction
Background: Reliable predictions of Cytotoxic T lymphocyte (CTL) epitopes are essential for rational vaccine design. Most importantly, they can minimize the experimental effort ne...
Mette V. Larsen, Claus Lundegaard, Kasper Lamberth...
BMCBI
2006
159views more  BMCBI 2006»
13 years 11 months ago
EpiJen: a server for multistep T cell epitope prediction
Background: The main processing pathway for MHC class I ligands involves degradation of proteins by the proteasome, followed by transport of products by the transporter associated...
Irini A. Doytchinova, Pingping Guan, Darren R. Flo...
BMCBI
2008
134views more  BMCBI 2008»
13 years 11 months ago
PEPOP: Computational design of immunogenic peptides
Background: Most methods available to predict protein epitopes are sequence based. There is a need for methods using 3D information for prediction of discontinuous epitopes and de...
Violaine Moreau, Cécile Fleury, Dominique P...
BMCBI
2008
144views more  BMCBI 2008»
13 years 11 months ago
Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis
Background: The prediction of conformational B-cell epitopes is one of the most important goals in immunoinformatics. The solution to this problem, even if approximate, would help...
Yanxin Huang, Yongli Bao, Shu Yan Guo, Yan Wang, C...
BMCBI
2008
133views more  BMCBI 2008»
13 years 11 months ago
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Background: Reliable prediction of antibody, or B-cell, epitopes remains challenging yet highly desirable for the design of vaccines and immunodiagnostics. A correlation between a...
Julia V. Ponomarenko, Huynh-Hoa Bui, Wei Li, Nicho...
BMCBI
2007
121views more  BMCBI 2007»
13 years 11 months ago
Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines
Background: In an epitope-based vaccine setting, the use of conserved epitopes would be expected to provide broader protection across multiple strains, or even species, than epito...
Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusse...