BMCBI
2005
13 years 11 months ago
2005
Background: There has been tremendous interest in the study of biological network structure. An array of measurements has been conceived to assess the topological properties of th...
BMCBI
2005
13 years 11 months ago
2005
Background: A number of algorithms for steady state analysis of metabolic networks have been developed over the years. Of these, Elementary Mode Analysis (EMA) has proven especial...
BMCBI
2006
13 years 11 months ago
2006
Background: The genomic information of a species allows for the genome-scale reconstruction of its metabolic capacity. Such a metabolic reconstruction gives support to metabolic e...
BMCBI
2006
2006
Analysis of optimal phenotypic space using elementary modes as applied to Corynebacterium glutamicum
13 years 11 months ago
Background: Quantification of the metabolic network of an organism offers insights into possible ways of developing mutant strain for better productivity of an extracellular metab...
BMCBI
2006
13 years 11 months ago
2006
Background: Microarray technology produces gene expression data on a genomic scale for an endless variety of organisms and conditions. However, this vast amount of information nee...
BMCBI
2008
13 years 11 months ago
2008
Background: Metabolic networks present a complex interconnected structure, whose understanding is in general a non-trivial task. Several formal approaches have been developed to s...
BMCBI
2007
13 years 11 months ago
2007
Background: The progress in the "-omic" sciences has allowed a deeper knowledge on many biological systems with industrial interest. This knowledge is still rarely used ...
BIB
2010
13 years 11 months ago
2010
PathwayTools is a production-quality software environment for creating a type of model-organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc integrates ...
BIRD
2008
Springer
14 years 1 months ago
2008
Springer
Abstract. We propose a computational method for reconstructing metabolic networks. The method utilizes optimization techniques and graph traversal algorithms to discover a set of b...
CMSB
2003
Springer
14 years 4 months ago
2003
Springer
Metabolic flux estimation—the problem of finding out the rates of reactions in metabolic pathways—is an important problem area in the study of metabolism. The most accurate t...