NAR
2011
13 years 2 months ago
2011
The Phospho.ELM resource (http://phospho.elm.eu .org) is a relational database designed to store in vivo and in vitro phosphorylation data extracted from the scientific literature...
BMCBI
2011
13 years 3 months ago
2011
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
BMCBI
2011
13 years 3 months ago
2011
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
BMCBI
2011
13 years 3 months ago
2011
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
NAR
2010
13 years 6 months ago
2010
Evaluating the accuracy of multiple sequence alignment (MSA) is critical for virtually every comparative sequence analysis that uses an MSA as input. Here we present the GUIDANCE ...
ACL
2010
13 years 10 months ago
2010
We describe a novel approach to unsupervised learning of the events that make up a script, along with constraints on their temporal ordering. We collect naturallanguage descriptio...
JCB
2000
13 years 11 months ago
2000
Multiple sequence alignments (MSAs) are frequently used in the study of families of protein sequences or DNA/RNA sequences. They are a fundamental tool for the understanding of th...
BMCBI
2004
13 years 11 months ago
2004
Background: A large number of PROSITE patterns select false positives and/or miss known true positives. It is possible that
BMCBI
2004
13 years 11 months ago
2004
Background: The prediction of ancestral protein sequences from multiple sequence alignments is useful for many bioinformatics analyses. Predicting ancestral sequences is not a sim...
BMCBI
2004
13 years 11 months ago
2004
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...