ISMB
2000
14 years 1 months ago
2000
A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
BIOCOMP
2006
14 years 1 months ago
2006
- The search for structural similarity among proteins can provide valuable insights into their functional mechanisms and their functional relationships. Though the protein 1D seque...
BIRD
2008
Springer
14 years 2 months ago
2008
Springer
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
GCB
2000
Springer
14 years 4 months ago
2000
Springer
We describe an algorithm for the automatic discovery of recurring patterns in protein structures. The patterns consist of individual residues having a defined order along the prote...
3DPVT
2002
IEEE
14 years 5 months ago
2002
IEEE
In this paper we present a method for protein structure comparison that is based on indexing. Unlike most methods using indexing, ours does not use invariants of the C atoms of th...
GCB
2005
Springer
14 years 6 months ago
2005
Springer
Motivation: With the increasing availability of protein structures, the generation of biologically meaningful 3D patterns from the simultaneous alignment of several protein struct...
BIRD
2007
Springer
14 years 6 months ago
2007
Springer
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
BICOB
2009
Springer
14 years 7 months ago
2009
Springer
Here we present a simple method based on graph spectral properties to automatically partition multi-domain proteins into individual domains. The identification of structural domain...