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    BMCBI
    2007
    136views more  BMCBI 2007»
    Comparison of protein structures by growing neighborhood alignments
    14 years 22 days ago
    Comparison of protein structures by growing neighborhood alignments
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    Background: Design of protein structure comparison algorithm is an important research issue, having far reaching implications. In this article, we describe a protein structure com...
    Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
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    BMCBI
    2007
    142views more  BMCBI 2007»
    SABERTOOTH: protein structural alignment based on a vectorial structure representation
    14 years 22 days ago
    SABERTOOTH: protein structural alignment based on a vectorial structure representation
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    Background: The task of computing highly accurate structural alignments of proteins in very short computation time is still challenging. This is partly due to the complexity of pr...
    Florian Teichert, Ugo Bastolla, Markus Porto
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    BMCBI
    2006
    150views more  BMCBI 2006»
    Protein structure similarity from principle component correlation analysis
    14 years 23 days ago
    Protein structure similarity from principle component correlation analysis
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    Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
    Xiaobo Zhou, James Chou, Stephen T. C. Wong
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    BMCBI
    2006
    81views more  BMCBI 2006»
    Multipolar representation of protein structure
    14 years 23 days ago
    Multipolar representation of protein structure
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    Background: That the structure determines the function of proteins is a central paradigm in biology. However, protein functions are more directly related to cooperative effects at...
    Apostol Gramada, Philip E. Bourne
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    BMCBI
    2006
    120views more  BMCBI 2006»
    Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
    14 years 23 days ago
    Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
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    Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
    Michael E. Bradley, Steven A. Benner
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    BMCBI
    2008
    123views more  BMCBI 2008»
    Validation of protein models by a neural network approach
    14 years 25 days ago
    Validation of protein models by a neural network approach
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    Background: The development and improvement of reliable computational methods designed to evaluate the quality of protein models is relevant in the context of protein structure re...
    Paolo Mereghetti, Maria Luisa Ganadu, Elena Papale...
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    BMCBI
    2008
    124views more  BMCBI 2008»
    Alignment of protein structures in the presence of domain motions
    14 years 25 days ago
    Alignment of protein structures in the presence of domain motions
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    Background: Structural alignment is an important step in protein comparison. Well-established methods exist for solving this problem under the assumption that the structures under...
    Roberto Mosca, Barbara Brannetti, Thomas R. Schnei...
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    BMCBI
    2008
    96views more  BMCBI 2008»
    MSDmotif: exploring protein sites and motifs
    14 years 25 days ago
    MSDmotif: exploring protein sites and motifs
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    Background: Protein structures have conserved features
    Adel Golovin, Kim Henrick
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    BMCBI
    2007
    122views more  BMCBI 2007»
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
    14 years 25 days ago
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
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    Background: Experimentally determined protein structures may contain errors and require validation. Conformational criteria based on the Ramachandran plot are mainly used to disti...
    Silvio C. E. Tosatto, Roberto Battistutta
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    BMCBI
    2007
    109views more  BMCBI 2007»
    Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
    14 years 25 days ago
    Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
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    Background: Structural genomics initiatives were established with the aim of solving protein structures on a large-scale. For many initiatives, such as the Protein Structure Initi...
    Russell L. Marsden, Tony A. Lewis, Christine A. Or...
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