BMCBI
2011
13 years 4 months ago
2011
Background: One of the strategies for protein function annotation is to search particular structural motifs that are known to be shared by proteins with a given function. Results:...
NAR
2010
13 years 7 months ago
2010
PROSESS (PROtein Structure Evaluation Suite and Server) is a web server designed to evaluate and validate protein structures generated by X-ray crystallography, NMR spectroscopy o...
NAR
2007
14 years 6 days ago
2007
KNOTS (http://knots.mit.edu) is a web server that detects knots in protein structures. Several protein structures have been reported to contain intricate knots. The physiological ...
NAR
2007
14 years 6 days ago
2007
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
NAR
2007
14 years 6 days ago
2007
TOPOFIT-DB (T-DB) is a public web-based database of protein structural alignments based on the TOPOFIT method, providing a comprehensive resource for comparative analysis of prote...
NAR
1998
14 years 11 days ago
1998
The FSSP database and its new supplement, the Dali Domain Dictionary, present a continuously updated classification of all known 3D protein structures. The classification is deriv...
BMCBI
2005
14 years 18 days ago
2005
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
BMCBI
2005
14 years 18 days ago
2005
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
BMCBI
2005
14 years 18 days ago
2005
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
NAR
2006
14 years 20 days ago
2006
MODBASE (http://salilab.org/modbase) is a relational database of annotated comparative protein structure models for all available protein sequences matched to at least one known p...