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ANOR
2005
46views more  ANOR 2005»
13 years 11 months ago
On the Convexity of Precedence Sequencing Games
: In this paper we study a class of cooperative sequencing games that arise from one-machine sequencing situations in which chain precedence relations are imposed on the jobs. It i...
Herbert Hamers, Flip Klijn, Bas van Velzen
JUCS
2008
147views more  JUCS 2008»
13 years 11 months ago
Authoring Courses with Rich Adaptive Sequencing for IMS Learning Design
: This paper describes the process of translating an adaptive sequencing strategy designed using Sequencing Graphs to the semantics of IMS Learning Design. The relevance of this co...
Sergio Gutiérrez Santos, Abelardo Pardo, Ca...
DAM
2006
106views more  DAM 2006»
13 years 11 months ago
Computational complexity of isothermic DNA sequencing by hybridization
In the paper, the computational complexity of several variants of the problem of isothermic DNA sequencing by hybridization, is analyzed. The isothermic sequencing is a recent met...
Jacek Blazewicz, Marta Kasprzak
BMCBI
2006
110views more  BMCBI 2006»
13 years 11 months ago
preAssemble: a tool for automatic sequencer trace data processing
Background: Trace or chromatogram files (raw data) are produced by automatic nucleic acid sequencing equipment or sequencers. Each file contains information which can be interpret...
Alexei A. Adzhubei, Jon K. Laerdahl, Anna V. Vlaso...
BMCBI
2008
152views more  BMCBI 2008»
13 years 11 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
BMCBI
2008
111views more  BMCBI 2008»
13 years 11 months ago
Probabilistic base calling of Solexa sequencing data
Background: Solexa/Illumina short-read ultra-high throughput DNA sequencing technology produces millions of short tags (up to 36 bases) by parallel sequencing-by-synthesis of DNA ...
Jacques Rougemont, Arnaud Amzallag, Christian Isel...
BMCBI
2010
112views more  BMCBI 2010»
13 years 11 months ago
SeqAnt: A web service to rapidly identify and annotate DNA sequence variations
Background: The enormous throughput and low cost of second-generation sequencing platforms now allow research and clinical geneticists to routinely perform single experiments that...
Amol Carl Shetty, Prashanth Athri, Kajari Mondal, ...
BMCBI
2010
116views more  BMCBI 2010»
13 years 11 months ago
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Background: High throughput sequencing has become an increasingly important tool for biological research. However, the existing software systems for managing and processing these ...
David B. Burdick, Christopher C. Cavnor, Jeremy Ha...
BMCBI
2008
111views more  BMCBI 2008»
13 years 11 months ago
Aspects of coverage in medical DNA sequencing
Background: DNA sequencing is now emerging as an important component in biomedical studies of diseases like cancer. Short-read, highly parallel sequencing instruments are expected...
Michael C. Wendl, Richard K. Wilson
BMCBI
2010
147views more  BMCBI 2010»
13 years 11 months ago
baySeq: Empirical Bayesian methods for identifying differential expression in sequence count data
Background: High throughput sequencing has become an important technology for studying expression levels in many types of genomic, and particularly transcriptomic, data. One key w...
Thomas J. Hardcastle, Krystyna A. Kelly