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» Annotation Process Management Revisited
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BMCBI
2010
145views more  BMCBI 2010»
13 years 9 months ago
JCoDA: a tool for detecting evolutionary selection
Background: The incorporation of annotated sequence information from multiple related species in commonly used databases (Ensembl, Flybase, Saccharomyces Genome Database, Wormbase...
Steven N. Steinway, Ruth Dannenfelser, Christopher...
DKE
2010
136views more  DKE 2010»
13 years 7 months ago
Application integration on the user interface level: An ontology-based approach
Integration of software applications can be achieved on different levels: the data level, the business logic level, and the user interface level. Integration on the user interface ...
Heiko Paulheim, Florian Probst
BMCBI
2010
160views more  BMCBI 2010»
13 years 4 months ago
eHive: An Artificial Intelligence workflow system for genomic analysis
Background: The Ensembl project produces updates to its comparative genomics resources with each of its several releases per year. During each release cycle approximately two week...
Jessica Severin, Kathryn Beal, Albert J. Vilella, ...
NAR
2011
307views Computer Vision» more  NAR 2011»
13 years 4 months ago
BRENDA, the enzyme information system in 2011
The BRENDA (BRaunschweig ENzyme Database, http://www.brenda-enzymes.org) enzyme information system is the main collection of enzyme functional and property data for the scientific...
Maurice Scheer, Andreas Grote, Antje Chang, Ida Sc...
NAR
2010
173views more  NAR 2010»
13 years 4 months ago
The Protein Naming Utility: a rules database for protein nomenclature
Generation of syntactically correct and unambiguous names for proteins is a challenging, yet vital task for functional annotation processes. Proteins are often named based on homo...
Johannes Goll, Robert Montgomery, Lauren M. Brinka...