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VLSID
2002
IEEE
106views VLSI» more  VLSID 2002»
14 years 8 months ago
SWASAD: An ASIC Design for High Speed DNA Sequence Matching
This paper presents the Smith and Waterman Algorithm-Specific ASIC Design (SWASAD) project. This is a hardware solution that implements the S&W algorithm.. The SWASAD is an imp...
Tony Han, Sri Parameswaran
IPPS
2006
IEEE
14 years 1 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
DNA
2005
Springer
154views Bioinformatics» more  DNA 2005»
14 years 1 months ago
Design of Autonomous DNA Cellular Automata
Recent experimental progress in DNA lattice construction, DNA robotics, and DNA computing provides the basis for designing DNA cellular computing devices, i.e. autonomous nano-mech...
Peng Yin, Sudheer Sahu, Andrew J. Turberfield, Joh...
BMCBI
2006
88views more  BMCBI 2006»
13 years 7 months ago
RiboSubstrates: a web application addressing the cleavage specificities of ribozymes in designated genomes
Background: RNA-dependent gene silencing is becoming a routine tool used in laboratories worldwide. One of the important remaining hurdles in the selection of the target sequence,...
Jean-François Lucier, Lucien Junior Bergero...
BMCBI
2007
190views more  BMCBI 2007»
13 years 7 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey