Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
Time course gene expression experiments are a popular means to infer co-expression. Many methods have been proposed to cluster genes or to build networks based on similarity measu...
Nicola Neretti, Daniel Remondini, Marc Tatar, John...
Markov random field (MRF, CRF) models are popular in
computer vision. However, in order to be computationally
tractable they are limited to incorporate only local interactions
a...
Systematic content screening of cell phenotypes in microscopic images has been shown promising in gene function understanding and drug design. However, manual annotation of cells ...
Jun Wang, Shih-Fu Chang, Xiaobo Zhou, Stephen T. C...
Traditional fMRI analysis has focused on modeling temporal changes in BOLD signals on a voxel-by-voxel basis to infer brain activation. To incorporate spatial information, we have...