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» Extensions to gene set enrichment
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RECOMB
2006
Springer
14 years 10 months ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
EUROMICRO
2006
IEEE
14 years 1 months ago
A UML Profile and a Methodology for Real-Time Systems Design
Modern real-time systems are increasingly complex and pervasive. Model Driven Engineering (MDE) is the emerging approach for the design of complex systems, strongly the usage of a...
Cesare Bartolini, Antonia Bertolino, Guglielmo De ...
BMCBI
2007
97views more  BMCBI 2007»
13 years 10 months ago
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
Background: The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interp...
Rudi Alberts, Peter Terpstra, Menno Hardonk, Leoni...
GCB
2008
Springer
103views Biometrics» more  GCB 2008»
13 years 11 months ago
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data
: Array-based analysis of chromatin immunoprecipitation data (ChIP-chip) is a powerful technique for identifying DNA target regions of individual transcription factors. Here, we pr...
Michael Seifert, Jens Keilwagen, Marc Strickert, I...
NAR
2008
175views more  NAR 2008»
13 years 9 months ago
Onto-CC: a web server for identifying Gene Ontology conceptual clusters
The Gene Ontology (GO) vocabulary has been extensively explored to analyze the functions of coexpressed genes. However, despite its extended use in Biology and Medical Sciences, t...
Rocío Romero-Záliz, Coral del Val, J...