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SASP
2009
IEEE
291views Hardware» more  SASP 2009»
14 years 1 months ago
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs
—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...
Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada
CIBCB
2007
IEEE
14 years 1 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
CLEF
2010
Springer
13 years 8 months ago
External and Intrinsic Plagiarism Detection Using a Cross-Lingual Retrieval and Segmentation System - Lab Report for PAN at CLEF
We present our hybrid system for the PAN challenge at CLEF 2010. Our system performs plagiarism detection for translated and non-translated externally as well as intrinsically plag...
Markus Muhr, Roman Kern, Mario Zechner, Michael Gr...
WABI
2007
Springer
14 years 29 days ago
Shotgun Protein Sequencing
Although snake venom proteins have been proven instrumental in the design of blood clotting and cytostatic breast cancer drugs, the main method in use to sequence these unknown pr...
Pavel A. Pevzner
ISCA
2005
IEEE
141views Hardware» more  ISCA 2005»
14 years 13 days ago
RegionScout: Exploiting Coarse Grain Sharing in Snoop-Based Coherence
It has been shown that many requests miss in all remote nodes in shared memory multiprocessors. We are motivated by the observation that this behavior extends to much coarser grai...
Andreas Moshovos