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» Probabilistic annotation of protein sequences based on funct...
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BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
BMCBI
2008
122views more  BMCBI 2008»
13 years 7 months ago
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
Background: The expansion of raw protein sequence databases in the post genomic era and availability of fresh annotated sequences for major localizations particularly motivated us...
Aarti Garg, Gajendra P. S. Raghava
NAR
2010
122views more  NAR 2010»
13 years 2 months ago
ELM: the status of the 2010 eukaryotic linear motif resource
Linear motifs are short segments of multidomain proteins that provide regulatory functions independently of protein tertiary structure. Much of intracellular signalling passes thr...
Cathryn M. Gould, Francesca Diella, Allegra Via, P...
RECOMB
2005
Springer
14 years 8 months ago
Learning Interpretable SVMs for Biological Sequence Classification
Background: Support Vector Machines (SVMs) ? using a variety of string kernels ? have been successfully applied to biological sequence classification problems. While SVMs achieve ...
Christin Schäfer, Gunnar Rätsch, Sö...
NAR
2011
223views Computer Vision» more  NAR 2011»
12 years 10 months ago
HitPredict: a database of quality assessed protein-protein interactions in nine species
Despite the availability of a large number of protein– protein interactions (PPIs) in several species, researchers are often limited to using very small subsets in a few organis...
Ashwini Patil, Kenta Nakai, Haruki Nakamura