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» Protein Conformational Flexibility Analysis with Noisy Data
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RECOMB
2007
Springer
14 years 11 months ago
Protein Conformational Flexibility Analysis with Noisy Data
Abstract. Protein conformational changes play a critical role in biological functions such as ligand-protein and protein-protein interactions. Due to the noise in structural data, ...
Anshul Nigham, David Hsu
BMCBI
2007
99views more  BMCBI 2007»
13 years 11 months ago
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Ki
Background: The mechanisms underlying protein function and associated conformational change are dominated by a series of local entropy fluctuations affecting the global structure ...
Jenny Gu, Philip E. Bourne
NAR
2010
106views more  NAR 2010»
13 years 5 months ago
Protein Geometry Database: a flexible engine to explore backbone conformations and their relationships to covalent geometry
The backbone bond lengths, bond angles, and planarity of a protein are influenced by the backbone conformation (u,w), but no tool exists to explore these relationships, leaving th...
Donald S. Berkholz, Peter B. Krenesky, John R. Dav...
RECOMB
2006
Springer
14 years 11 months ago
Simulating Protein Motions with Rigidity Analysis
Abstract. Protein motions, ranging from molecular flexibility to largescale conformational change, play an essential role in many biochemical processes. Despite the explosion in ou...
Shawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M...
BIOCOMP
2008
14 years 9 days ago
Identifying Protein Flexibility by NMA
- Here proposed apriori method for identification of protein flexibility relies on one end-state conformation of the protein. This method has comparative advantage over many others...
Kresimir Sikic, Branko Jeren, Sanja Tomic