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BMCBI
2007
134views more  BMCBI 2007»
13 years 8 months ago
Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
CF
2006
ACM
13 years 10 months ago
Intermediately executed code is the key to find refactorings that improve temporal data locality
The growing speed gap between memory and processor makes an efficient use of the cache ever more important to reach high performance. One of the most important ways to improve cac...
Kristof Beyls, Erik H. D'Hollander
HPCA
2006
IEEE
14 years 9 months ago
Software-hardware cooperative memory disambiguation
In high-end processors, increasing the number of in-flight instructions can improve performance by overlapping useful processing with long-latency accesses to the main memory. Buf...
Ruke Huang, Alok Garg, Michael C. Huang
ISCA
2005
IEEE
166views Hardware» more  ISCA 2005»
14 years 2 months ago
Increased Scalability and Power Efficiency by Using Multiple Speed Pipelines
One of the most important problems faced by microarchitecture designers is the poor scalability of some of the current solutions with increased clock frequencies and wider pipelin...
Emil Talpes, Diana Marculescu
ICS
2003
Tsinghua U.
14 years 1 months ago
Inferential queueing and speculative push for reducing critical communication latencies
Communication latencies within critical sections constitute a major bottleneck in some classes of emerging parallel workloads. In this paper, we argue for the use of Inferentially...
Ravi Rajwar, Alain Kägi, James R. Goodman