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BIBE
2004
IEEE
179views Bioinformatics» more  BIBE 2004»
13 years 11 months ago
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study
This research explores the feasibility of semantic similarity approaches to supporting predictive tasks in functional genomics. It aims to establish potential relationships betwee...
Francisco Azuaje, Olivier Bodenreider
GECCO
2009
Springer
190views Optimization» more  GECCO 2009»
13 years 11 months ago
Genetic programming for protein related text classification
Since the genomics revolution, bioinformatics has never been so popular. Many researchers have investigated with great success the use of evolutionary computation in bioinformatic...
Marc Segond, Cyril Fonlupt, Denis Robilliard
DNA
2009
Springer
194views Bioinformatics» more  DNA 2009»
13 years 11 months ago
A Domain-Specific Language for Programming in the Tile Assembly Model
We introduce a domain-specific language (DSL) for creating sets of tile types for simulations bstract Tile Assembly Model. The language defines objects known as tile templates, wh...
David Doty, Matthew J. Patitz
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
13 years 11 months ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
BIRD
2007
Springer
13 years 11 months ago
Fast Search Algorithms for Position Specific Scoring Matrices
Fast search algorithms for finding good instances of patterns given as position specific scoring matrices are developed, and some empirical results on their performance on DNA sequ...
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
BIRD
2007
Springer
118views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Biological Network Inference Using Redundancy Analysis
The paper presents MRNet, an original method for inferring genetic networks from microarray data. This method is based on maximum relevance/minimum redundancy (MRMR), an effective ...
Patrick Emmanuel Meyer, Kevin Kontos, Gianluca Bon...
BIRD
2007
Springer
13 years 11 months ago
An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra
Abstract. Searching and mining nuclear magnetic resonance (NMR)spectra of naturally occurring substances is an important task to investigate new potentially useful chemical compoun...
Alexander Hinneburg, Andrea Porzel, Karina Wolfram
BIRD
2007
Springer
168views Bioinformatics» more  BIRD 2007»
13 years 11 months ago
Ontology-Based MEDLINE Document Classification
Abstract. An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automa...
Fabrice Camous, Stephen Blott, Alan F. Smeaton
BIBM
2007
IEEE
104views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
A Protocol to Detect Local Affinities Involved in Proteins Distant Interactions
The tridimensional structure of a protein is constrained or stabilized by some local interactions between distant residues of the protein, such as disulfide bonds, electrostatic i...
Christophe Nicolas Magnan, Cécile Capponi, ...
BIBM
2007
IEEE
110views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
Risk Factor Searching Heuristics for SNP Case-Control Studies
This paper addresses the computational challenge facing association analysis of case-control studies
Dumitru Brinza, Alexander Zelikovsky