BMCBI
2004
13 years 11 months ago
2004
Background: The discovery of cis-regulatory modules in metazoan genomes is crucial for understanding the connection between genes and organism diversity. It is important to quanti...
BMCBI
2004
13 years 11 months ago
2004
Background: This paper addresses the problem of discovering transcription factor binding sites in heterogeneous sequence data, which includes regulatory sequences of one or more g...
BMCBI
2004
13 years 11 months ago
2004
BMCBI
2004
13 years 11 months ago
2004
Background: We present Pegasys
BMCBI
2004
13 years 11 months ago
2004
Background: Protein-protein interactions play a critical role in protein function. Completion of many genomes is being followed rapidly by major efforts to identify interacting pr...
BMCBI
2004
13 years 11 months ago
2004
Background: Motivated by a biomedical database set up by our group, we aimed to develop a generic database front-end with embedded knowledge discovery and analysis features. A maj...
BMCBI
2004
13 years 11 months ago
2004
Background: Profile Hidden Markov Models (pHMMs) are a widely used tool for protein family research. Up to now, however, there exists no method to visualize all of their central a...
BMCBI
2004
13 years 11 months ago
2004
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
BMCBI
2004
13 years 11 months ago
2004
Background: The Split ends (Spen) family are large proteins characterised by N-terminal RNA recognition motifs (RRMs) and a conserved SPOC (Spen paralog and ortholog C-terminal) d...
BMCBI
2004
13 years 11 months ago
2004
Background: A number of completely sequenced eukaryotic genome data are available in the public domain. Eukaryotic genes are either 'intron containing' or 'intronle...