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BMCBI
2006
61views more  BMCBI 2006»
13 years 11 months ago
A probabilistic classifier for olfactory receptor pseudogenes
Idan Menashe, Ronny Aloni, Doron Lancet
BMCBI
2006
116views more  BMCBI 2006»
13 years 11 months ago
TaxMan: a taxonomic database manager
Background: Phylogenetic analysis of large, multiple-gene datasets, assembled from public sequence databases, is rapidly becoming a popular way to approach difficult phylogenetic ...
Martin Jones, Mark Blaxter
BMCBI
2006
100views more  BMCBI 2006»
13 years 11 months ago
Using the nucleotide substitution rate matrix to detect horizontal gene transfer
Background: Horizontal gene transfer (HGT) has allowed bacteria to evolve many new capabilities. Because transferred genes perform many medically important functions, such as conf...
Micah Hamady, M. D. Betterton, Rob Knight
BMCBI
2006
203views more  BMCBI 2006»
13 years 11 months ago
Independent component analysis reveals new and biologically significant structures in micro array data
Background: An alternative to standard approaches to uncover biologically meaningful structures in micro array data is to treat the data as a blind source separation (BSS) problem...
Attila Frigyesi, Srinivas Veerla, David Lindgren, ...
BMCBI
2006
105views more  BMCBI 2006»
13 years 11 months ago
Prediction of protein submitochondria locations by hybridizing pseudo-amino acid composition with various physicochemical featur
Background: Knowing the submitochondria localization of a mitochondria protein is an important step to understand its function. We develop a method which is based on an extended v...
Pufeng Du, Yanda Li
BMCBI
2006
207views more  BMCBI 2006»
13 years 11 months ago
A new measure for functional similarity of gene products based on Gene Ontology
Background: Gene Ontology (GO) is a standard vocabulary of functional terms and allows for coherent annotation of gene products. These annotations provide a basis for new methods ...
Andreas Schlicker, Francisco S. Domingues, Jö...
BMCBI
2006
147views more  BMCBI 2006»
13 years 11 months ago
The NeuARt II system: a viewing tool for neuroanatomical data based on published neuroanatomical atlases
Background: Anatomical studies of neural circuitry describing the basic wiring diagram of the brain produce intrinsically spatial, highly complex data of great value to the neuros...
Gully A. P. C. Burns, Wei-Cheng Cheng, Richard H. ...
BMCBI
2006
161views more  BMCBI 2006»
13 years 11 months ago
miTarget: microRNA target gene prediction using a support vector machine
Sung-Kyu Kim, Jin-Wu Nam, Je-Keun Rhee, Wha-Jin Le...
BMCBI
2006
137views more  BMCBI 2006»
13 years 11 months ago
Curation of complex, context-dependent immunological data
Background: The Immune Epitope Database and Analysis Resource (IEDB) is dedicated to capturing, housing and analyzing complex immune epitope related data http:// www.immuneepitope...
Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima S...
BMCBI
2006
149views more  BMCBI 2006»
13 years 11 months ago
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteri
Background: Accurate interpretation of data obtained by unsupervised analysis of large scale expression profiling studies is currently frequently performed by visually combining s...
Roel G. W. Verhaak, Mathijs A. Sanders, Maarten A....