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    BMCBI
    2007
    124views more  BMCBI 2007»
    Analysis on multi-domain cooperation for predicting protein-protein interactions
    14 years 20 days ago
    Analysis on multi-domain cooperation for predicting protein-protein interactions
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    Background: Domains are the basic functional units of proteins. It is believed that protein-protein interactions are realized through domain interactions. Revealing multi-domain c...
    Rui-Sheng Wang, Yong Wang, Ling-Yun Wu, Xiang-Sun ...
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    BMCBI
    2007
    114views more  BMCBI 2007»
    Probabilistic prediction and ranking of human protein-protein interactions
    14 years 20 days ago
    Probabilistic prediction and ranking of human protein-protein interactions
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    Background: Although the prediction of protein-protein interactions has been extensively investigated for yeast, few such datasets exist for the far larger proteome in human. Furt...
    Michelle S. Scott, Geoffrey J. Barton
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    BMCBI
    2007
    133views more  BMCBI 2007»
    Semantic integration to identify overlapping functional modules in protein interaction networks
    14 years 20 days ago
    Semantic integration to identify overlapping functional modules in protein interaction networks
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    Background: The systematic analysis of protein-protein interactions can enable a better understanding of cellular organization, processes and functions. Functional modules can be ...
    Young-Rae Cho, Woochang Hwang, Murali Ramanathan, ...
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    BMCBI
    2007
    116views more  BMCBI 2007»
    Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement
    14 years 20 days ago
    Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement
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    Background: Biological information is commonly used to cluster or classify entities of interest such as genes, conditions, species or samples. However, different sources of data c...
    Francisco R. Pinto, João A. Carriço,...
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    BMCBI
    2007
    95views more  BMCBI 2007»
    Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
    14 years 20 days ago
    Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
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    Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
    Roger A. Craig, Li Liao
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    BMCBI
    2007
    69views more  BMCBI 2007»
    Improved precision and accuracy for microarrays using updated probe set definitions
    14 years 20 days ago
    Improved precision and accuracy for microarrays using updated probe set definitions
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    Rickard Sandberg, Ola Larsson
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    BMCBI
    2007
    91views more  BMCBI 2007»
    A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
    14 years 20 days ago
    A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
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    Background: Odorant binding proteins (OBPs) are believed to shuttle odorants from the environment to the underlying odorant receptors, for which they could potentially serve as od...
    Ganesan Pugalenthi, E. Ke Tang, Ponnuthurai N. Sug...
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    BMCBI
    2007
    146views more  BMCBI 2007»
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
    14 years 20 days ago
    Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
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    Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
    Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
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    BMCBI
    2007
    161views more  BMCBI 2007»
    Efficient classification of complete parameter regions based on semidefinite programming
    14 years 20 days ago
    Efficient classification of complete parameter regions based on semidefinite programming
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    Background: Current approaches to parameter estimation are often inappropriate or inconvenient for the modelling of complex biological systems. For systems described by nonlinear ...
    Lars Kuepfer, Uwe Sauer, Pablo A. Parrilo
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    BMCBI
    2007
    117views more  BMCBI 2007»
    DNA-based watermarks using the DNA-Crypt algorithm
    14 years 20 days ago
    DNA-based watermarks using the DNA-Crypt algorithm
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    Background: The aim of this paper is to demonstrate the application of watermarks based on DNA sequences to identify the unauthorized use of genetically modified organisms (GMOs) ...
    Dominik Heider, Angelika Barnekow
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