Sciweavers

BMCBI
2008
100views more  BMCBI 2008»
13 years 11 months ago
Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen p
Background: T-cell epitopes that promiscuously bind to multiple alleles of a human leukocyte antigen (HLA) supertype are prime targets for development of vaccines and immunotherap...
Guanglan Zhang, Asif M. Khan, Kellathur N. Sriniva...
BMCBI
2008
79views more  BMCBI 2008»
13 years 11 months ago
Semi-automatic conversion of BioProp semantic annotation to PASBio annotation
Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Hua...
BMCBI
2008
104views more  BMCBI 2008»
13 years 11 months ago
Robust consensus computation
Tobias Rausch, Anne-Katrin Emde, Knut Reinert
BMCBI
2008
134views more  BMCBI 2008»
13 years 11 months ago
Identification of transcription factor contexts in literature using machine learning approaches
Background: Availability of information about transcription factors (TFs) is crucial for genome biology, as TFs play a central role in the regulation of gene expression. While man...
Hui Yang, Goran Nenadic, John A. Keane
BMCBI
2008
153views more  BMCBI 2008»
13 years 11 months ago
How to make the most of NE dictionaries in statistical NER
Background: When term ambiguity and variability are very high, dictionary-based Named Entity Recognition (NER) is not an ideal solution even though large-scale terminological reso...
Yutaka Sasaki, Yoshimasa Tsuruoka, John McNaught, ...
BMCBI
2008
140views more  BMCBI 2008»
13 years 11 months ago
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations
Background: The most renowned biological ontology, Gene Ontology (GO) is widely used for annotations of genes and gene products of different organisms. However, there are shortcom...
Qingwei Xu, Yixiang Shi, Qiang Lu, Guo-qing Zhang,...
BMCBI
2008
79views more  BMCBI 2008»
13 years 11 months ago
In silico docking of urokinase plasminogen activator and integrins
Background: Urokinase, its receptor and the integrins are functionally associated and involved in regulation of cell signaling, migration, adhesion and proliferation. No structura...
Bernard Degryse, Juan Fernández-Recio, Vale...
BMCBI
2008
171views more  BMCBI 2008»
13 years 11 months ago
Comparative analysis of five protein-protein interaction corpora
Background: Growing interest in the application of natural language processing methods to biomedical text has led to an increasing number of corpora and methods targeting protein-...
Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari B...