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BMCBI
2008
72views more  BMCBI 2008»
13 years 11 months ago
Using a literature-based NMF model for discovering gene functional relationships
ent> <title> <p>UT-ORNL-KBRIN Bioinformatics Summit 2008</p> </title> <editor>Eric C Rouchka and Julia Krushkal</editor> <note>Meeting ...
Elina Tjioe, Michael W. Berry, Ramin Homayouni, Ke...
BMCBI
2008
132views more  BMCBI 2008»
13 years 11 months ago
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures
Background: Advances in DNA microarray technology portend that molecular signatures from which microarray will eventually be used in clinical environments and personalized medicin...
Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. S...
BMCBI
2008
157views more  BMCBI 2008»
13 years 11 months ago
Dimension reduction with redundant gene elimination for tumor classification
Background: Analysis of gene expression data for tumor classification is an important application of bioinformatics methods. But it is hard to analyse gene expression data from DN...
Xue-Qiang Zeng, Guo-Zheng Li, Jack Y. Yang, Mary Q...
BMCBI
2008
99views more  BMCBI 2008»
13 years 11 months ago
Exhaustive prediction of disease susceptibility to coding base changes in the human genome
Background: Single Nucleotide Polymorphisms (SNPs) are the most abundant form of genomic variation and can cause phenotypic differences between individuals, including diseases. Ba...
Vinayak Kulkarni, Mounir Errami, Robert Barber, Ha...
BMCBI
2008
138views more  BMCBI 2008»
13 years 11 months ago
Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
Background: Most existing transcriptional databases like Comprehensive Systems-Biology Database (CSB.DB) and Arabidopsis Microarray Database and Analysis Toolbox (GENEVESTIGATOR) ...
Arun Rawat, Georg J. Seifert, Youping Deng
BMCBI
2008
158views more  BMCBI 2008»
13 years 11 months ago
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics
spectives. A total of 149 abstracts were accepted and presented in the poster session and 31 of them were selected for oral presentation. At the opening of the meeting, Roderic Gui...
Graziano Pesole, Manuela Helmer-Citterich
BMCBI
2008
127views more  BMCBI 2008»
13 years 11 months ago
AMMO-Prot: amine system project 3D-model finder
Background: Amines are biogenic amino acid derivatives, which play pleiotropic and very important yet complex roles in animal physiology. For many other relevant biomolecules, bio...
Ismael Navas Delgado, Raúl Montañez,...
BMCBI
2008
151views more  BMCBI 2008»
13 years 11 months ago
CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge
Background: The customary medicinal plant knowledge possessed by the Australian Aboriginal people is a significant resource. Published information on it is scattered throughout th...
Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulp...
BMCBI
2008
159views more  BMCBI 2008»
13 years 11 months ago
Multivariate hierarchical Bayesian model for differential gene expression analysis in microarray experiments
Background: Identification of differentially expressed genes is a typical objective when analyzing gene expression data. Recently, Bayesian hierarchical models have become increas...
Hongya Zhao, Kwok-Leung Chan, Lee-Ming Cheng, Hong...
BMCBI
2008
117views more  BMCBI 2008»
13 years 11 months ago
Cascaded classifiers for confidence-based chemical named entity recognition
Chemical named entities represent an important facet of biomedical text. We have developed a system to use character-based ngrams, Maximum Entropy Markov Models and rescoring to r...
Peter Corbett, Ann A. Copestake