Sciweavers

BMCBI
2008
46views more  BMCBI 2008»
13 years 11 months ago
uShuffle: A useful tool for shuffling biological sequences while preserving the k-let counts
Minghui Jiang, James Anderson, Joel Gillespie, Mar...
BMCBI
2008
152views more  BMCBI 2008»
13 years 11 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
BMCBI
2008
122views more  BMCBI 2008»
13 years 11 months ago
High-throughput bioinformatics with the Cyrille2 pipeline system
Background: Modern omics research involves the application of high-throughput technologies that generate vast volumes of data. These data need to be pre-processed, analyzed and in...
Mark W. E. J. Fiers, Ate van der Burgt, Erwin Date...
BMCBI
2008
156views more  BMCBI 2008»
13 years 11 months ago
Chromhome: A rich internet application for accessing comparative chromosome homology maps
Background: Comparative genomics has become a significant research area in recent years, following the availability of a number of sequenced genomes. The comparison of genomes is ...
Sridevi Nagarajan, Willem Rens, James Stalker, Ton...
BMCBI
2008
96views more  BMCBI 2008»
13 years 11 months ago
MSDmotif: exploring protein sites and motifs
Background: Protein structures have conserved features
Adel Golovin, Kim Henrick
BMCBI
2008
110views more  BMCBI 2008»
13 years 11 months ago
Assessment of composite motif discovery methods
Background: Computational discovery of regulatory elements is an important area of bioinformatics research and more than a hundred motif discovery methods have been published. Tra...
Kjetil Klepper, Geir Kjetil Sandve, Osman Abul, Jo...
BMCBI
2008
187views more  BMCBI 2008»
13 years 11 months ago
PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
Background: The conservation of gene order among prokaryotic genomes can provide valuable insight into gene function, protein interactions, or events by which genomes have evolved...
Christine Fong, Laurence Rohmer, Matthew Radey, Mi...
BMCBI
2008
105views more  BMCBI 2008»
13 years 11 months ago
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
Background: In real-time quantitative PCR studies using absolute plasmid DNA standards, a calibration curve is developed to estimate an unknown DNA concentration. However, potenti...
Mano Sivaganesan, Shawn Seifring, Manju Varma, Ric...
BMCBI
2008
105views more  BMCBI 2008»
13 years 11 months ago
A gene pattern mining algorithm using interchangeable gene sets for prokaryotes
Background: Mining gene patterns that are common to multiple genomes is an important biological problem, which can lead us to novel biological insights. When family classification...
Meng Hu, Kwangmin Choi, Wei Su, Sun Kim, Jiong Yan...