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    NAR
    2006
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    PHEPS: web-based pH-dependent Protein Electrostatics Server
    14 years 21 days ago
    PHEPS: web-based pH-dependent Protein Electrostatics Server
    Download  phemto.orgchm.bas.bg
    PHEPS (pH-dependent Protein Electrostatics Server) is a web service for fast prediction and experiment planning support, as well as for correlation and analysis of experimentally ...
    Alexander A. Kantardjiev, Boris P. Atanasov
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    NAR
    2006
    96views more  NAR 2006»
    mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
    14 years 21 days ago
    mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences
    Download  design.lunarpages.com
    The mitochondrial genome, contained in the subcellular mitochondrial network, encodes a small number of peptides pivotal for cellular energy production. Mitochondrialgenesarehighl...
    Max Ingman, Ulf Gyllensten
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    NAR
    2006
    71views more  NAR 2006»
    TSEMA: interactive prediction of protein pairings between interacting families
    14 years 21 days ago
    TSEMA: interactive prediction of protein pairings between interacting families
    Download  pdg.cnb.uam.es
    An entire family of methodologies for predicting protein interactions is based on the observed fact that families of interacting proteins tend to have similar phylogenetic trees d...
    José M. G. Izarzugaza, David de Juan, Carle...
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    NAR
    2006
    84views more  NAR 2006»
    Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
    14 years 21 days ago
    Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases
    Download  www.scripps.edu
    Individual zinc finger (ZF) domains that recognize DNA triplets with high specificity and affinity can be used to create designer transcription factors and nucleases that are spec...
    Jeffrey G. Mandell, Carlos F. Barbas III
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    NAR
    2006
    75views more  NAR 2006»
    OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
    14 years 21 days ago
    OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
    Download  plantbio.berkeley.edu
    The OrthoMCL database (http://orthomcl.cbil.upenn. edu) houses ortholog group predictions for 55 spe10 cies, including 16 bacterial and 4 archaeal genomes representing phylogeneti...
    Feng Chen, Aaron J. Mackey, Christian J. Stoeckert...
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    NAR
    2006
    61views more  NAR 2006»
    MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
    14 years 21 days ago
    MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
    Download  www.biosci.ohio-state.edu
    The increasing availability of structurally aligned protein families has made it possible to use statistical methods to discover regions of interpositional dependenciesof residue ...
    Hatice Gulcin Ozer, William C. Ray
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    NAR
    2006
    62views more  NAR 2006»
    siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
    14 years 21 days ago
    siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
    Download  ui-tei.rnai.jp
    siVirus (http://siVirus.RNAi.jp/) is a web-based online software system that provides efficient short interfering RNA (siRNA) design for antiviral RNA interference (RNAi). siVirus...
    Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka ...
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    NAR
    2006
    82views more  NAR 2006»
    PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
    14 years 21 days ago
    PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins
    Download  cubic.bioc.columbia.edu
    PROFtmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria. For each query protein, PROFtmb provides both a Z-value indicating that the protein actually c...
    Henry R. Bigelow, Burkhard Rost
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    NAR
    2006
    110views more  NAR 2006»
    EMAGE: a spatial database of gene expression patterns during mouse embryo development
    14 years 21 days ago
    EMAGE: a spatial database of gene expression patterns during mouse embryo development
    Download  genex.hgu.mrc.ac.uk
    EMAGE (http://genex.hgu.mrc.ac.uk/Emage/database) is a freely available, curated database of gene expression patterns generated by in situ techniques in the developing mouse embry...
    Jeffrey H. Christiansen, Yiya Yang, Shanmugasundar...
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    NAR
    2006
    91views more  NAR 2006»
    YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
    14 years 21 days ago
    YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
    Download  www.bahlerlab.info
    We present YOGY a web-based resource for orthologous proteins from nine eukaryotic organisms: Homo sapiens, Mus musculus, Rattus norvegicus, Arabidopsis thaliana, Drosophila melan...
    Christopher J. Penkett, James A. Morris, Valerie W...
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