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    WOB
    2007
    95views Bioinformatics» more  WOB 2007»
    Gene Set Enrichment Analysis Using Non-parametric Scores
    14 years 18 days ago
    Gene Set Enrichment Analysis Using Non-parametric Scores
    Download  www.ifir.edu.ar
    Abstract. Gene Set Enrichment Analysis (GSEA) is a well-known technique used for studying groups of functionally related genes and their correlation with phenotype. This method cre...
    Ariel E. Bayá, Mónica G. Larese, Pab...
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    WOB
    2007
    116views Bioinformatics» more  WOB 2007»
    Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information
    14 years 18 days ago
    Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information
    Download  www.cin.ufpe.br
    Abstract. We propose a method for global validation of gene clusterings. The method selects a set of informative and non-redundant GO terms through an exploration of the Gene Ontol...
    Ivan G. Costa, Marcílio Carlos Pereira de S...
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    WOB
    2003
    129views Bioinformatics» more  WOB 2003»
    Procsimo: uma Ferramenta de Procura de Similaridade entre Operons
    14 years 24 days ago
    Procsimo: uma Ferramenta de Procura de Similaridade entre Operons
    Download  www.ic.uff.br
    In this work, we propose a software tool, called PROCSIMO, which aims the identification of similarities between operons in bacterial genomes. From a database which contains the ch...
    Carlos Azevedo, Alexandre Plastino, Ana Tereza R. ...
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    WOB
    2003
    140views Bioinformatics» more  WOB 2003»
    Computing Maximum Subsequence in Parallel
    14 years 24 days ago
    Computing Maximum Subsequence in Parallel
    Download  www.ime.usp.br
    The maximum subsequence problem finds the contiguous subsequence of n real numbers with the highest sum. This is an important problem that arises in several contexts in Computatio...
    Carlos E. R. Alves, Edson Cáceres, Siang W....
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    WOB
    2004
    102views Bioinformatics» more  WOB 2004»
    An Agent-Based System for Re-annotation of Genomes
    14 years 24 days ago
    An Agent-Based System for Re-annotation of Genomes
    Download  www.inf.ufrgs.br
    Genome annotation projects may produce wrong results since they may be based on obsolete data or wrong models. This work aims to develop an automatic re-annotation system that use ...
    Leonardo Vianna do Nascimento, Ana L. C. Bazzan
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    WOB
    2004
    134views Bioinformatics» more  WOB 2004»
    Reconstruction of Phylogenetic Trees using the Ant Colony Optimization Paradigm
    14 years 24 days ago
    Reconstruction of Phylogenetic Trees using the Ant Colony Optimization Paradigm
    Download  www.funpecrp.com.br
    We developed a new approach for the reconstruction of phylogenetic trees using ant colony optimization metaheuristics.Atree is constructed using a fully connected graph and the pro...
    Heitor S. Lopes, Mauricio Perretto
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    WOB
    2004
    120views Bioinformatics» more  WOB 2004»
    Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
    14 years 24 days ago
    Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
    Download  www.funpecrp.com.br
    ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
    Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
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    WOB
    2004
    91views Bioinformatics» more  WOB 2004»
    Mutual Information Content of Homologous DNA Sequences
    14 years 24 days ago
    Mutual Information Content of Homologous DNA Sequences
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    The necessary information to reproduce and keep an organism is codified in acid nucleic molecules. Deepening the knowledge about how the information is stored in these bio-sequence...
    Luciana Pessoa, Helena Cristina da Gama Leit&atild...
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    WOB
    2004
    82views Bioinformatics» more  WOB 2004»
    A Multi-Neighbor-Joining Approach for Phylogenetic Tree Reconstruction and Visualization
    14 years 24 days ago
    A Multi-Neighbor-Joining Approach for Phylogenetic Tree Reconstruction and Visualization
    Download  www.funpecrp.com.br
    ABSTRACT. The computationally challenging problem of reconstructing the phylogeny of a set of contemporary data, such as DNA sequences or morphological attributes, was treated by a...
    Ana Estela Antunes da Silva, Wilfredo J. Puma-Vill...
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    WOB
    2004
    103views Bioinformatics» more  WOB 2004»
    An I/O Device Driver for Bioinformatics Tools: the case for BLAST
    14 years 24 days ago
    An I/O Device Driver for Bioinformatics Tools: the case for BLAST
    Download  www.funpecrp.com.br
    There are many bioinformatics tools that deal with input/ output (I/O) issues by using filing systems from the most common operating systems, such as Linux or MS Windows. However, ...
    Renato Mauro, Sérgio Lifschitz
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