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RECOMB
2006
Springer
14 years 8 months ago
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
Kai Wang, Ilya Nemenman, Nilanjana Banerjee, Adam ...
IEEEMM
2007
146views more  IEEEMM 2007»
13 years 7 months ago
Learning Microarray Gene Expression Data by Hybrid Discriminant Analysis
— Microarray technology offers a high throughput means to study expression networks and gene regulatory networks in cells. The intrinsic nature of high dimensionality and small s...
Yijuan Lu, Qi Tian, Maribel Sanchez, Jennifer L. N...
RECOMB
2009
Springer
14 years 2 months ago
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods
In 2006, a debate has risen on the question of the efficiency of bioinformatics methods to reconstruct mammalian ancestral genomes. Three years later, Gordon et al. (PLoS Genetics,...
Eric Tannier
BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
Systematic identification of yeast cell cycle transcription factors using multiple data sources
Background: Eukaryotic cell cycle is a complex process and is precisely regulated at many levels. Many genes specific to the cell cycle are regulated transcriptionally and are exp...
Wei-Sheng Wu, Wen-Hsiung Li
JCB
2008
170views more  JCB 2008»
13 years 7 months ago
Efficiently Identifying Max-Gap Clusters in Pairwise Genome Comparison
The spatial clustering of genes across different genomes has been used to study important problems in comparative genomics, from identification of operons to detection of homologo...
Xu Ling, Xin He, Dong Xin, Jiawei Han