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IPPS
2006
IEEE
14 years 2 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
FPGA
2003
ACM
156views FPGA» more  FPGA 2003»
14 years 1 months ago
Architectures and algorithms for synthesizable embedded programmable logic cores
As integrated circuits become more and more complex, the ability to make post-fabrication changes will become more and more attractive. This ability can be realized using programm...
Noha Kafafi, Kimberly Bozman, Steven J. E. Wilton
ICCS
2005
Springer
14 years 2 months ago
Resource Partitioning Algorithms in a Programmable Service Grid Architecture
Abstract. We propose the use of programmable Grid resource partitioning heuristics in the context of a distributed service Grid management architecture. The architecture is capable...
Pieter Thysebaert, Bruno Volckaert, Marc De Leenhe...
VLSID
2006
IEEE
158views VLSI» more  VLSID 2006»
14 years 2 months ago
Programmable LDPC Decoder Based on the Bubble-Sort Algorithm
Low density parity check (LDPC) codes are one of the most powerful error correcting codes known. Recent research have pointed out their potential for a low cost, low latency hardw...
Rohit Singhal, Gwan S. Choi, Rabi N. Mahapatra
BMCBI
2007
233views more  BMCBI 2007»
13 years 8 months ago
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Background: To infer homology and subsequently gene function, the Smith-Waterman (SW) algorithm is used to find the optimal local alignment between two sequences. When searching s...
Isaac T. S. Li, Warren Shum, Kevin Truong