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» Design of DNA origami
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CSB
2003
IEEE
14 years 15 hour ago
Group Testing With DNA Chips: Generating Designs and Decoding Experiments
DNA microarrays are a valuable tool for massively parallel DNA-DNA hybridization experiments. Currently, most applications rely on the existence of sequence-specific oligonucleot...
Alexander Schliep, David C. Torney, Sven Rahmann
RECOMB
2003
Springer
14 years 7 months ago
Designing seeds for similarity search in genomic DNA
Large-scale comparison of genomic DNA is of fundamental importance in annotating functional elements of genomes. To perform large comparisons efficiently, BLAST (Methods: Companio...
Jeremy Buhler, Uri Keich, Yanni Sun
VLSID
2002
IEEE
106views VLSI» more  VLSID 2002»
14 years 7 months ago
SWASAD: An ASIC Design for High Speed DNA Sequence Matching
This paper presents the Smith and Waterman Algorithm-Specific ASIC Design (SWASAD) project. This is a hardware solution that implements the S&W algorithm.. The SWASAD is an imp...
Tony Han, Sri Parameswaran
NGC
2002
Springer
13 years 6 months ago
DNA Sequence Design Using Templates
Sequence design is a crucial problem in information-based biotechnology such as DNA-based computation. We introduce a simple strategy named template method that systematically gene...
Masanori Arita, Satoshi Kobayashi
RECOMB
2007
Springer
14 years 7 months ago
Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments
Our group has recently developed a compact, universal protein binding microarray (PBM) that can be used to determine the binding preferences of transcription factors (TFs) [1]. Thi...
Anthony A. Philippakis, Aaron M. Qureshi, Michael ...