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BMCBI
2006
114views more  BMCBI 2006»
15 years 4 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
VISUALIZATION
2005
IEEE
15 years 10 months ago
VolQD: Direct Volume Rendering of Multi-million Atom Quantum Dot Simulations
In this work we present a hardware-accelerated direct volume rendering system for visualizing multivariate wave functions in semiconducting quantum dot (QD) simulations. The simul...
Wei Qiao, David S. Ebert, Alireza Entezari, Marek ...
IEEEHPCS
2010
15 years 2 months ago
Retargeting PLAPACK to clusters with hardware accelerators
Hardware accelerators are becoming a highly appealing approach to boost the raw performance as well as the price-performance and power-performance ratios of current clusters. In t...
Manuel Fogue, Francisco D. Igual, Enrique S. Quint...
DATE
2003
IEEE
98views Hardware» more  DATE 2003»
15 years 9 months ago
Using Formal Techniques to Debug the AMBA System-on-Chip Bus Protocol
System-on-chip (SoC) designs use bus protocols for high performance data transfer among the Intellectual Property (IP) cores. These protocols incorporate advanced features such as...
Abhik Roychoudhury, Tulika Mitra, S. R. Karri
ICCAD
2003
IEEE
136views Hardware» more  ICCAD 2003»
16 years 1 months ago
Synthesis of Heterogeneous Distributed Architectures for Memory-Intensive Applications
— Memory-intensive applications present unique challenges to an ASIC designer in terms of the choice of memory organization, memory size requirements, bandwidth and access latenc...
Chao Huang, Srivaths Ravi, Anand Raghunathan, Nira...