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    BMCBI
    2005
    63views more  BMCBI 2005»
    Tandem machine learning for the identification of genes regulated by transcription factors
    14 years 2 months ago
    Tandem machine learning for the identification of genes regulated by transcription factors
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    Deendayal Dinakarpandian, Venetia Raheja, Saumil M...
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    BMCBI
    2005
    94views more  BMCBI 2005»
    Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator
    14 years 2 months ago
    Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator
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    Background: Computational methods for problem solving need to interleave information access and algorithm execution in a problem-specific workflow. The structures of these workflo...
    Alexander García Castro, Samuel Thoraval, L...
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    BMCBI
    2005
    142views more  BMCBI 2005»
    transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    14 years 2 months ago
    transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
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    Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
    Olaf R. P. Bininda-Emonds
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    BMCBI
    2005
    130views more  BMCBI 2005»
    Squid - a simple bioinformatics grid
    14 years 2 months ago
    Squid - a simple bioinformatics grid
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    Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
    Paulo C. Carvalho, Rafael V. Glória, Antoni...
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    BMCBI
    2005
    144views more  BMCBI 2005»
    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in
    14 years 2 months ago
    Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in
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    Background: Comparison of data produced on different microarray platforms often shows surprising discordance. It is not clear whether this discrepancy is caused by noisy data or b...
    Scott L. Carter, Aron C. Eklund, Brigham H. Mecham...
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    BMCBI
    2005
    56views more  BMCBI 2005»
    Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data
    14 years 2 months ago
    Optimized between-group classification: a new jackknife-based gene selection procedure for genome-wide expression data
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    Florent Baty, Michel P. Bihl, Guy Perrière,...
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    BMCBI
    2005
    84views more  BMCBI 2005»
    Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates
    14 years 2 months ago
    Information theory-based algorithm for in silico prediction of PCR products with whole genomic sequences as templates
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    Background: A new algorithm for assessing similarity between primer and template has been developed based on the hypothesis that annealing of primer to template is an information ...
    Youfang Cao, Lianjie Wang, Kexue Xu, Chunhai Kou, ...
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    BMCBI
    2005
    137views more  BMCBI 2005»
    A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
    14 years 2 months ago
    A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise
    Download  www.biomedcentral.com
    Background: Popular methods to reconstruct molecular phylogenies are based on multiple sequence alignments, in which addition or removal of data may change the resulting tree topo...
    Olivier Bastien, Philippe Ortet, Sylvaine Roy, Eri...
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    BMCBI
    2005
    61views more  BMCBI 2005»
    MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution
    14 years 2 months ago
    MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution
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    James J. Cai, David K. Smith, Xuhua Xia, Kwok-yung...
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    BMCBI
    2005
    61views more  BMCBI 2005»
    SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
    14 years 2 months ago
    SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
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    Background: The interacting residues of protein and nucleic acid sequences are close to each other
    Jan C. Biro, Gergely Fördös
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