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BMCBI
2005
92views more  BMCBI 2005»
13 years 11 months ago
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators
Background: Estimators of free energies are routinely used to judge the quality of protein structural models. As these estimators still present inaccuracies, they are frequently e...
Federico Fogolari, Silvio C. E. Tosatto, Giorgio C...
BMCBI
2005
74views more  BMCBI 2005»
13 years 11 months ago
wFleaBase: the Daphnia genome database
John Colbourne, Vasanth R. Singan, Don G. Gilbert
BMCBI
2005
88views more  BMCBI 2005»
13 years 11 months ago
BMC Bioinformatics comes of age
Matthew J. Cockerill
BMCBI
2005
108views more  BMCBI 2005»
13 years 11 months ago
The modeled structure of the RNA dependent RNA polymerase of GBV-C Virus suggests a role for motif E in Flaviviridae RNA polymer
Background: The Flaviviridae virus family includes major human and animal pathogens. The RNA dependent RNA polymerase (RdRp) plays a central role in the replication process, and t...
François Ferron, Cécile Bussetta, H&...
BMCBI
2005
131views more  BMCBI 2005»
13 years 11 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...
BMCBI
2005
84views more  BMCBI 2005»
13 years 11 months ago
A method of precise mRNA/DNA homology-based gene structure prediction
Background: Accurate and automatic gene finding and structural prediction is a common problem in bioinformatics, and applications need to be capable of handling non-canonical spli...
Alexander G. Churbanov, Mark Pauley, Daniel Quest,...
BMCBI
2005
187views more  BMCBI 2005»
13 years 11 months ago
JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases
Background: Many three-dimensional (3D) images are routinely collected in biomedical research and a number of digital atlases with associated anatomical and other information have...
Guangjie Feng, Nick Burton, Bill Hill, Duncan Davi...
BMCBI
2005
150views more  BMCBI 2005»
13 years 11 months ago
Discover protein sequence signatures from protein-protein interaction data
Background: The development of high-throughput technologies such as yeast two-hybrid systems and mass spectrometry technologies has made it possible to generate large protein-prot...
Jianwen Fang, Ryan J. Haasl, Yinghua Dong, Gerald ...
BMCBI
2005
93views more  BMCBI 2005»
13 years 11 months ago
SPdb - a signal peptide database
Background: The signal peptide plays an important role in protein targeting and protein translocation in both prokaryotic and eukaryotic cells. This transient, short peptide seque...
Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan