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    BMCBI
    2007
    64views more  BMCBI 2007»
    Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data
    14 years 19 days ago
    Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data
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    Randall Hulshizer, Eric M. Blalock
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    BMCBI
    2007
    126views more  BMCBI 2007»
    Reconstruction of cell population dynamics using CFSE
    14 years 19 days ago
    Reconstruction of cell population dynamics using CFSE
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    Background: Quantifying cell division and death is central to many studies in the biological sciences. The fluorescent dye CFSE allows the tracking of cell division in vitro and i...
    Andrew Yates, Cliburn Chan, Jessica Strid, Simon M...
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    BMCBI
    2007
    135views more  BMCBI 2007»
    RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that un
    14 years 19 days ago
    RECOVIR: An application package to automatically identify some single stranded RNA viruses using capsid protein residues that un
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    Background: Most single stranded RNA (ssRNA) viruses mutate rapidly to generate large number of strains having highly divergent capsid sequences. Accurate strain recognition in un...
    Dianhui Zhu, George E. Fox, Sugoto Chakravarty
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    BMCBI
    2007
    86views more  BMCBI 2007»
    Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
    14 years 19 days ago
    Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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    Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, ...
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    BMCBI
    2007
    141views more  BMCBI 2007»
    HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
    14 years 19 days ago
    HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
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    Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
    Erik Larsson, Per Lindahl, Petter Mostad
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    BMCBI
    2007
    143views more  BMCBI 2007»
    Factor analysis for gene regulatory networks and transcription factor activity profiles
    14 years 19 days ago
    Factor analysis for gene regulatory networks and transcription factor activity profiles
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    Background: Most existing algorithms for the inference of the structure of gene regulatory networks from gene expression data assume that the activity levels of transcription fact...
    Iosifina Pournara, Lorenz Wernisch
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    BMCBI
    2007
    74views more  BMCBI 2007»
    TAMEE: data management and analysis for tissue microarrays
    14 years 19 days ago
    TAMEE: data management and analysis for tissue microarrays
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    Gerhard G. Thallinger, Kerstin Baumgartner, Martin...
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    BMCBI
    2007
    80views more  BMCBI 2007»
    AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions
    14 years 19 days ago
    AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions
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    Background: Replication origins are considered important sites for understanding the molecular mechanisms involved in DNA replication. Many computational methods have been develop...
    David S. H. Chew, Ming-Ying Leung, Kwok Pui Choi
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    BMCBI
    2007
    106views more  BMCBI 2007»
    Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logari
    14 years 19 days ago
    Improved classification accuracy in 1- and 2-dimensional NMR metabolomics data using the variance stabilising generalised logari
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    Background: Classifying nuclear magnetic resonance (NMR) spectra is a crucial step in many metabolomics experiments. Since several multivariate classification techniques depend up...
    Helen M. Parsons, Christian Ludwig, Ulrich L. G&uu...
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    BMCBI
    2007
    153views more  BMCBI 2007»
    An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
    14 years 19 days ago
    An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
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    Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
    Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
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