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    BMCBI
    2007
    82views more  BMCBI 2007»
    Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms
    14 years 19 days ago
    Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms
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    Menaka Rajapakse, Bertil Schmidt, Lin Feng, Vladim...
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    BMCBI
    2007
    65views more  BMCBI 2007»
    Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions
    14 years 19 days ago
    Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions
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    Davide Corà, Ferdinando Di Cunto, Michele C...
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    BMCBI
    2007
    103views more  BMCBI 2007»
    Dynamic simulation of regulatory networks using SQUAD
    14 years 19 days ago
    Dynamic simulation of regulatory networks using SQUAD
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    Background: The ambition of most molecular biologists is the understanding of the intricate network of molecular interactions that control biological systems. As scientists uncove...
    Alessandro Di Cara, Abhishek Garg, Giovanni De Mic...
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    BMCBI
    2007
    45views more  BMCBI 2007»
    Regulation of metabolic networks by small molecule metabolites
    14 years 19 days ago
    Regulation of metabolic networks by small molecule metabolites
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    Alex Gutteridge, Minoru Kanehisa, Susumu Goto
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    BMCBI
    2007
    89views more  BMCBI 2007»
    msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
    14 years 19 days ago
    msmsEval: tandem mass spectral quality assignment for high-throughput proteomics
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    Background: In proteomics experiments, database-search programs are the method of choice for protein identification from tandem mass spectra. As amino acid sequence databases grow...
    Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Car...
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    BMCBI
    2007
    114views more  BMCBI 2007»
    Large scale statistical inference of signaling pathways from RNAi and microarray data
    14 years 19 days ago
    Large scale statistical inference of signaling pathways from RNAi and microarray data
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    Background: The advent of RNA interference techniques enables the selective silencing of biologically interesting genes in an efficient way. In combination with DNA microarray tec...
    Holger Fröhlich, Mark Fellmann, Holger Sü...
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    BMCBI
    2007
    119views more  BMCBI 2007»
    A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments
    14 years 19 days ago
    A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments
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    Background: Gas chromatography-mass spectrometry (GC-MS) is a robust platform for the profiling of certain classes of small molecules in biological samples. When multiple samples ...
    Mark D. Robinson, David P. De Souza, Woon Wai Keen...
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    BMCBI
    2007
    88views more  BMCBI 2007»
    TMM@: a web application for the analysis of transmembrane helix mobility
    14 years 19 days ago
    TMM@: a web application for the analysis of transmembrane helix mobility
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    Lars Skjaerven, Inge Jonassen, Nathalie Reuter
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    BMCBI
    2007
    101views more  BMCBI 2007»
    Relationship between insertion/deletion (indel) frequency of proteins and essentiality
    14 years 19 days ago
    Relationship between insertion/deletion (indel) frequency of proteins and essentiality
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    Background: In a previous study, we demonstrated that some essential proteins from pathogenic organisms contained sizable insertions/deletions (indels) when aligned to human prote...
    Simon K. Chan, Michael Hsing, Fereydoun Hormozdiar...
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    BMCBI
    2007
    140views more  BMCBI 2007»
    Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets
    14 years 19 days ago
    Prediction potential of candidate biomarker sets identified and validated on gene expression data from multiple datasets
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    Background: Independently derived expression profiles of the same biological condition often have few genes in common. In this study, we created populations of expression profiles...
    Michael Gormley, William Dampier, Adam Ertel, Bilg...
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