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    BMCBI
    2007
    172views more  BMCBI 2007»
    msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
    14 years 21 days ago
    msBayes: Pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation
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    Background: Although testing for simultaneous divergence (vicariance) across different population-pairs that span the same barrier to gene flow is of central importance to evoluti...
    Michael J. Hickerson, Eli Stahl, Naoki Takebayashi
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    BMCBI
    2007
    134views more  BMCBI 2007»
    Benchmarking natural-language parsers for biological applications using dependency graphs
    14 years 21 days ago
    Benchmarking natural-language parsers for biological applications using dependency graphs
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    Background: Interest is growing in the application of syntactic parsers to natural language processing problems in biology, but assessing their performance is difficult because di...
    Andrew B. Clegg, Adrian J. Shepherd
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    BMCBI
    2007
    195views more  BMCBI 2007»
    NeuroTerrain - a client-server system for browsing 3D biomedical image data sets
    14 years 21 days ago
    NeuroTerrain - a client-server system for browsing 3D biomedical image data sets
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    Background: Three dimensional biomedical image sets are becoming ubiquitous, along with the canonical atlases providing the necessary spatial context for analysis. To make full us...
    Carl Gustafson, William J. Bug, Jonathan Nissanov
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    BMCBI
    2007
    127views more  BMCBI 2007»
    Characterization of protein-interaction networks in tumors
    14 years 21 days ago
    Characterization of protein-interaction networks in tumors
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    Background: Analyzing differential-gene-expression data in the context of protein-interaction networks (PINs) yields information on the functional cellular status. PINs can be for...
    Alexander Platzer, Paul Perco, Arno Lukas, Bernd M...
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    BMCBI
    2007
    88views more  BMCBI 2007»
    Computational analysis of the relationship between allergenicity and digestibility of allergenic proteins in simulated gastric f
    14 years 21 days ago
    Computational analysis of the relationship between allergenicity and digestibility of allergenic proteins in simulated gastric f
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    Background: Safety assessment of genetically modified (GM) food, with regard to allergenic potential of transgene-encoded xenoproteins, typically involves several different method...
    Bingjun Jiang, Hong Qu, Yuanlei Hu, Ting Ni, Zhong...
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    BMCBI
    2007
    76views more  BMCBI 2007»
    Background frequencies for residue variability estimates: BLOSUM revisited
    14 years 21 days ago
    Background frequencies for residue variability estimates: BLOSUM revisited
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    I. Mihalek, I. Res, Olivier Lichtarge
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    BMCBI
    2007
    181views more  BMCBI 2007»
    ASMPKS: an analysis system for modular polyketide synthases
    14 years 21 days ago
    ASMPKS: an analysis system for modular polyketide synthases
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    Background: Polyketides are secondary metabolites of microorganisms with diverse biological activities, including pharmacological functions such as antibiotic, antitumor and agroc...
    Hongseok Tae, Eun-Bae Kong, Kiejung Park
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    BMCBI
    2007
    168views more  BMCBI 2007»
    Benchmarking consensus model quality assessment for protein fold recognition
    14 years 21 days ago
    Benchmarking consensus model quality assessment for protein fold recognition
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    Background: Selecting the highest quality 3D model of a protein structure from a number of alternatives remains an important challenge in the field of structural bioinformatics. M...
    Liam J. McGuffin
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    BMCBI
    2007
    100views more  BMCBI 2007»
    PARE: A tool for comparing protein abundance and mRNA expression data
    14 years 21 days ago
    PARE: A tool for comparing protein abundance and mRNA expression data
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    Background: Techniques for measuring protein abundance are rapidly advancing and we are now in a situation where we anticipate many protein abundance data sets will be available i...
    Eric Z. Yu, Anne E. Counterman Burba, Mark Gerstei...
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    BMCBI
    2007
    166views more  BMCBI 2007»
    PathFinder: mining signal transduction pathway segments from protein-protein interaction networks
    14 years 21 days ago
    PathFinder: mining signal transduction pathway segments from protein-protein interaction networks
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    Background: A Signal transduction pathway is the chain of processes by which a cell converts an extracellular signal into a response. In most unicellular organisms, the number of ...
    Gürkan Bebek, Jiong Yang
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