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    BMCBI
    2004
    139views more  BMCBI 2004»
    Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels an
    13 years 11 months ago
    Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels an
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    Background: The detection of small yet statistically significant differences in gene expression in spotted DNA microarray studies is an ongoing challenge. Meeting this challenge r...
    Jeffrey P. Townsend
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    BMCBI
    2004
    162views more  BMCBI 2004»
    Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
    13 years 11 months ago
    Identifying spatially similar gene expression patterns in early stage fruit fly embryo images: binary feature versus invariant m
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    Background: Modern developmental biology relies heavily on the analysis of embryonic gene expression patterns. Investigators manually inspect hundreds or thousands of expression p...
    Rajalakshmi Gurunathan, Bernard Van Emden, Sethura...
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    BMCBI
    2004
    150views more  BMCBI 2004»
    Graph-based iterative Group Analysis enhances microarray interpretation
    13 years 11 months ago
    Graph-based iterative Group Analysis enhances microarray interpretation
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    Background: One of the most time-consuming tasks after performing a gene expression experiment is the biological interpretation of the results by identifying physiologically impor...
    Rainer Breitling, Anna Amtmann, Pawel Herzyk
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    BMCBI
    2004
    98views more  BMCBI 2004»
    Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)
    13 years 11 months ago
    Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)
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    Background: Serial Analysis of Gene Expression (SAGE) is a functional genomic technique that quantitatively analyzes the cellular transcriptome. The analysis of SAGE libraries rel...
    Sergey V. Anisimov, Alexei A. Sharov
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    JIPS
    2007
    134views more  JIPS 2007»
    An Efficient Functional Analysis Method for Micro-array Data Using Gene Ontology
    13 years 11 months ago
    An Efficient Functional Analysis Method for Micro-array Data Using Gene Ontology
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    : Microarray data includes tens of thousands of gene expressions simultaneously, so it can be effectively used in identifying the phenotypes of diseases. However, the retrieval of ...
    Dong-wan Hong, Jong-keun Lee, Sung-soo Park, Sang-...
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    JIB
    2007
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    Achieving k-anonymity in DataMarts used for gene expressions exploitation
    13 years 11 months ago
    Achieving k-anonymity in DataMarts used for gene expressions exploitation
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    Gene expression profiling is a sophisticated method to discover differences in activation patterns of genes between different patient collectives. By reasonably defining patient...
    Konrad Stark, Johann Eder, Kurt Zatloukal
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    TNN
    2008
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    Generalized Linear Discriminant Analysis: A Unified Framework and Efficient Model Selection
    13 years 11 months ago
    Generalized Linear Discriminant Analysis: A Unified Framework and Efficient Model Selection
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    Abstract--High-dimensional data are common in many domains, and dimensionality reduction is the key to cope with the curse-of-dimensionality. Linear discriminant analysis (LDA) is ...
    Shuiwang Ji, Jieping Ye
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    BMCBI
    2005
    120views more  BMCBI 2005»
    A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools
    13 years 11 months ago
    A microarray study of MPP+-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools
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    Background: This paper describes a microarray study including data quality control, data analysis and the analysis of the mechanism of toxicity (MOT) induced by 1-methyl-4-phenylp...
    Zengjun Xu, Tucker A. Patterson, Jonathan D. Wren,...
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    BMCBI
    2005
    153views more  BMCBI 2005»
    Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
    13 years 11 months ago
    Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
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    Background: Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a ...
    Giacomo Finocchiaro, Francesco Mancuso, Heiko M&uu...
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    BMCBI
    2005
    178views more  BMCBI 2005»
    A quantization method based on threshold optimization for microarray short time series
    13 years 11 months ago
    A quantization method based on threshold optimization for microarray short time series
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    Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
    Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
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