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    BMCBI
    2005
    150views more  BMCBI 2005»
    Discover protein sequence signatures from protein-protein interaction data
    14 years 9 days ago
    Discover protein sequence signatures from protein-protein interaction data
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    Background: The development of high-throughput technologies such as yeast two-hybrid systems and mass spectrometry technologies has made it possible to generate large protein-prot...
    Jianwen Fang, Ryan J. Haasl, Yinghua Dong, Gerald ...
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    BMCBI
    2005
    253views more  BMCBI 2005»
    The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks
    14 years 9 days ago
    The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks
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    Background: This paper describes an automated method for finding clusters of interconnected proteins in protein interaction networks and retrieving protein annotations associated ...
    Ruth Dunn, Frank Dudbridge, Christopher M. Sanders...
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    BMCBI
    2005
    77views more  BMCBI 2005»
    Ontological visualization of protein-protein interactions
    14 years 9 days ago
    Ontological visualization of protein-protein interactions
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    Background: Cellular processes require the interaction of many proteins across several cellular compartments. Determining the collective network of such interactions is an importa...
    Harold J. Drabkin, Christopher Hollenbeck, David P...
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    BMCBI
    2005
    61views more  BMCBI 2005»
    SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
    14 years 9 days ago
    SeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structures
    Download  www.biomedcentral.com
    Background: The interacting residues of protein and nucleic acid sequences are close to each other
    Jan C. Biro, Gergely Fördös
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    BMCBI
    2005
    95views more  BMCBI 2005»
    Oligomeric protein structure networks: insights into protein-protein interactions
    14 years 9 days ago
    Oligomeric protein structure networks: insights into protein-protein interactions
    Download  www.biomedcentral.com
    Background: Protein-protein association is essential for a variety of cellular processes and hence a large number of investigations are being carried out to understand the princip...
    K. V. Brinda, Saraswathi Vishveshwara
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    BMCBI
    2005
    119views more  BMCBI 2005»
    The distance-profile representation and its application to detection of distantly related protein families
    14 years 9 days ago
    The distance-profile representation and its application to detection of distantly related protein families
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    Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
    Chin-Jen Ku, Golan Yona
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    BIOINFORMATICS
    2005
    114views more  BIOINFORMATICS 2005»
    Predicting protein localization in budding Yeast
    14 years 10 days ago
    Predicting protein localization in budding Yeast
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    Motivation: Most of the existing methods in predicting protein subcellular location were used to deal with the cases limited within the scope from two to five localizations, and o...
    Kuo-Chen Chou, Yu-Dong Cai
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    TCBB
    2008
    138views more  TCBB 2008»
    PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM
    14 years 10 days ago
    PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM
    Download  www.stat.lsa.umich.edu
    The subcellular locations of proteins are important functional annotations. An effective and reliable subcellular localization method is necessary for proteomics research. This pap...
    Man-Wai Mak, Jian Guo, Sun-Yuan Kung
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    NCA
    2006
    IEEE
    121views Computer Networks» more  NCA 2006»
    Analysing the localisation sites of proteins through neural networks ensembles
    14 years 11 days ago
    Analysing the localisation sites of proteins through neural networks ensembles
    Download  www.dcs.bbk.ac.uk
    Scientists involved in the area of proteomics are currently seeking integrated, customised and validated research solutions to better expedite their work in proteomics analyses and...
    Aristoklis D. Anastasiadis, George D. Magoulas
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    NC
    2006
    130views Neural Networks» more  NC 2006»
    Dynamic self-assembly in living systems as computation
    14 years 11 days ago
    Dynamic self-assembly in living systems as computation
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    Biochemical reactions taking place in living systems that map different inputs to specific outputs are intuitively recognized as performing information processing. Conventional wis...
    Ann M. Bouchard, Gordon C. Osbourn
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