NAR
2006
13 years 11 months ago
2006
Expresso is a multiple sequence alignment server that aligns sequences using structural information. The user only needs to provide sequences. The server runs BLAST to identify cl...
JSC
2008
13 years 11 months ago
2008
We present an algorithm for computing generators for the ideal of algebraic relations among sequences which are given by homogeneous linear recurrence equations with constant coef...
JCB
2006
13 years 11 months ago
2006
A wavelet transform of the DNA "walk" constructed from a genomic sequence offers a direct visualization of short and long-range patterns in nucleotide sequences. We stud...
JASIS
2006
13 years 11 months ago
2006
In this paper we present a system for the exploration of video sequences. The system, GAMBAL-EVS, segments video sequences extracting an image for each shot and then clusters such...
JMLR
2008
13 years 11 months ago
2008
Efficient and expressive comparison of sequences is an essential procedure for learning with sequential data. In this article we propose a generic framework for computation of sim...
JCB
2008
13 years 11 months ago
2008
In this article, we propose a new method for computing rare maximal exact matches between multiple sequences. A rare match between k sequences S1; : : :; Sk is a string that occur...
COMBINATORICS
2007
13 years 12 months ago
2007
It is well-known that Sturmian sequences are the non ultimately periodic sequences that are balanced over a 2-letter alphabet. They are also characterized by their complexity: the...
IPL
2008
13 years 12 months ago
2008
The longest common subsequence and sequence alignment problems have been studied extensively and they can be regarded as the relationship measurement between sequences. However, m...
BMCBI
2007
13 years 12 months ago
2007
Background: The ESTuber database (http://www.itb.cnr.it/estuber) includes 3,271 Tuber borchii expressed sequence tags (EST). The dataset consists of 2,389 sequences from an in-hou...
BMCBI
2007
13 years 12 months ago
2007
Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...