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    Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
    13 years 8 months ago
    Combinatorial Approaches to Finding Subtle Signals in DNA Sequences
    Download  www-ab.informatik.uni-tuebingen.de
    Signal nding pattern discovery in unaligned DNA sequences is a fundamental problem in both computer science and molecular biology with important applications in locating regulator...
    Pavel A. Pevzner, Sing-Hoi Sze
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    An Evaluation of Ontology Exchange Languages for Bioinformatics
    13 years 8 months ago
    An Evaluation of Ontology Exchange Languages for Bioinformatics
    Download  www.biomediator.org
    Ontologies are specifications of the concepts in a given field, and of the relationships among those concepts. The development of ontologies for molecular-biology information and ...
    Robin McEntire, Peter D. Karp, Neil F. Abernethy, ...
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    ISMB
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    Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated
    13 years 8 months ago
    Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated
    Download  murphylab.web.cmu.edu
    Determination of the functions of all expressed proteins represents one of the major upcoming challenges in computational molecular biology. Since subcellular location plays a cru...
    Robert F. Murphy, Michael V. Boland, Meel Velliste
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    Computation and Visualization of Degenerate Repeats in Complete Genomes
    13 years 8 months ago
    Computation and Visualization of Degenerate Repeats in Complete Genomes
    Download  www.zbh.uni-hamburg.de
    The repetitive structure of genomic DNA holds many secrets to be discovered. A systematic study of repetitive DNA on a genomic or inter-genomic scale requires extensive algorithmi...
    Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher...
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    UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences
    13 years 8 months ago
    UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences
    Download  www.aaai.org
    Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret...
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    Search for a New Description of Protein Topology and Local Structure
    13 years 8 months ago
    Search for a New Description of Protein Topology and Local Structure
    Download  www.aaai.org
    A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
    Lukasz Jaroszewski, Adam Godzik
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    Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization
    13 years 8 months ago
    Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization
    Download  www.aaai.org
    This paper presents a framework called Parallel Experiment Planning (PEP) that is based on an abstraction of how experiments are performed in the domain of macromolecular crystall...
    Vanathi Gopalakrishnan, Bruce G. Buchanan, John M....
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    Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data
    13 years 8 months ago
    Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data
    Download  www.aaai.org
    Ian Holmes, William J. Bruno
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    Integrative Analysis of Protein Interaction Data
    13 years 8 months ago
    Integrative Analysis of Protein Interaction Data
    Download  www.aaai.org
    We have developed a method for the integrative analysis of protein interaction data. It comprises clustering, visualization and data integration components. The method is generall...
    Matthias Fellenberg, Kaj Albermann, Alfred Zollner...
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    Prediction of the Number of Residue Contacts in Proteins
    13 years 8 months ago
    Prediction of the Number of Residue Contacts in Proteins
    Download  www.igb.uci.edu
    Knowing the number of residue contacts in a protein is crucial for deriving constraints useful in modeling protein folding, protein structure, and/or scoring remote homology searc...
    Piero Fariselli, Rita Casadio
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