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ISMB
2000
13 years 8 months ago
Protein Family Classification Using Sparse Markov Transducers
Eleazar Eskin, William Noble Grundy, Yoram Singer
ISMB
2000
13 years 8 months ago
Accelerating Protein Classification Using Suffix Trees
Position-specific scoring matrices have been used extensively to recognize highly conserved protein regions. We present a method for accelerating these searches using a suffix tre...
Bogdan Dorohonceanu, Craig G. Nevill-Manning
ISMB
2000
13 years 8 months ago
A Practical Algorithm for Optimal Inference of Haplotypes from Diploid Populations
The next phase of human genomics will involve largescale screens of populations for signi cant DNA polymorphisms, notably single nucleotide polymorphisms SNP's. Dense human S...
Dan Gusfield
ISMB
2000
13 years 8 months ago
Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling
Christopher Bailey-Kellogg, John J. Kelley, Cliffo...
ISMB
2000
13 years 8 months ago
Analysis of Gene Expression Microarrays for Phenotype Classification
Several microarray technologies that monitor the level of expression of a large number of genes have recently emerged. Given DNA-microarray data for a set of cells characterized b...
Andrea Califano, Gustavo Stolovitzky, Yuhai Tu
ISMB
2000
13 years 8 months ago
A Probabilistic Learning Approach to Whole-Genome Operon Prediction
We present a computational approach to predicting operons in the genomes of prokaryotic organisms. Our approach uses machine learning methods to induce predictive models for this ...
Mark Craven, David Page, Jude W. Shavlik, Joseph B...
ISMB
1998
13 years 8 months ago
Automated Clustering and Assembly of Large EST Collections
The avMlability of large EST(Expressed Sequence Tag)databases has led to a revolution in the waynew genes are cloned. Difficulties arise, however,due to high error rates and redun...
David P. Yee, Darrell Conklin
ISMB
1998
13 years 8 months ago
Genetic Algorithms for Protein Threading
Jacqueline Yadgari, Amihood Amir, Ron Unger