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    ISMB
    1997
    99views Computational Biology» more  ISMB 1997»
    Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
    14 years 25 days ago
    Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
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    We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
    Russ B. Altman, Neil F. Abernethy, Richard O. Chen
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    ISMB
    1997
    104views Computational Biology» more  ISMB 1997»
    Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations
    14 years 25 days ago
    Increasing Consensus Accuracy in DNA Fragment Assemblies by Incorporating Fluorescent Trace Representations
    Download  www.aaai.org
    We present a new method for determining the consensus sequence in DNA fragment assemblies. The new method, Trace-Evidence, directly incorporates aligned ABI trace information into...
    Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Sha...
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    ISMB
    2000
    189views Computational Biology» more  ISMB 2000»
    Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
    14 years 26 days ago
    Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
    Download  cbit.snu.ac.kr
    We have developed a set of methods and tools for automatic discovery of putative regulatory signals in genome sequences. The analysis pipeline consists of gene expression data clu...
    Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Ro...
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    ISMB
    2000
    80views Computational Biology» more  ISMB 2000»
    A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy
    14 years 26 days ago
    A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy
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    Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto
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    ISMB
    2000
    112views Computational Biology» more  ISMB 2000»
    Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest
    14 years 26 days ago
    Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest
    Download  www.aaai.org
    The first available genome of a multicellular organism, C. elegans, was used as a test case for protein fold assignment using PSI-BLAST, followed by rational structure modeling an...
    J. Michael Sauder, Roland L. Dunbrack Jr.
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    ISMB
    2000
    149views Computational Biology» more  ISMB 2000»
    Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
    14 years 26 days ago
    Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis
    Download  www.aaai.org
    The immensevolumeof data resulting from DNAmicroarray experiments, accompaniedby an increase in the numberof publications discussing gene-related discoveries, presents a majordata...
    Hagit Shatkay, Stephen Edwards, W. John Wilbur, Ma...
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    ISMB
    2000
    134views Computational Biology» more  ISMB 2000»
    Linear Modeling of Genetic Networks from Experimental Data
    14 years 26 days ago
    Linear Modeling of Genetic Networks from Experimental Data
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    Eugene P. van Someren, Lodewyk F. A. Wessels, Marc...
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    ISMB
    2000
    155views Computational Biology» more  ISMB 2000»
    Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
    14 years 26 days ago
    Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
    Download  www.aaai.org
    Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
    Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...
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    ISMB
    2000
    85views Computational Biology» more  ISMB 2000»
    A Statistical Method for Finding Transcription Factor Binding Sites
    14 years 26 days ago
    A Statistical Method for Finding Transcription Factor Binding Sites
    Download  www.aaai.org
    Understanding the mechanismsthat determine the regulation of geneexpression is an important and challenging problem. A fundamental subproblem is to identify DNA-bindingsites for u...
    Saurabh Sinha, Martin Tompa
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    ISMB
    2000
    109views Computational Biology» more  ISMB 2000»
    A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
    14 years 26 days ago
    A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions
    Download  www.aaai.org
    We present in this paper a pragmatic strategy to perform information extraction from biologic texts. Since the emergence of the information extraction field, techniques have evolv...
    Denys Proux, François Rechenmann, Laurent J...
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