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    BMCBI
    2007
    94views more  BMCBI 2007»
    An evolutionary method for learning HMM structure: prediction of protein secondary structure
    14 years 18 days ago
    An evolutionary method for learning HMM structure: prediction of protein secondary structure
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    Kyoung-Jae Won, Thomas Hamelryck, Adam Prügel...
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    BMCBI
    2007
    182views more  BMCBI 2007»
    Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control
    14 years 18 days ago
    Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control
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    Background: The progress in the "-omic" sciences has allowed a deeper knowledge on many biological systems with industrial interest. This knowledge is still rarely used ...
    Ana P. Teixeira, Carlos Alves, Paula M. Alves, Man...
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    BMCBI
    2007
    181views more  BMCBI 2007»
    Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
    14 years 18 days ago
    Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D
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    Background: Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing ...
    Aleksey A. Porollo, Jaroslaw Meller
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    BMCBI
    2007
    51views more  BMCBI 2007»
    A survey of orphan enzyme activities
    14 years 18 days ago
    A survey of orphan enzyme activities
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    Yannick Pouliot, Peter D. Karp
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    BMCBI
    2007
    138views more  BMCBI 2007»
    Fast computation of distance estimators
    14 years 18 days ago
    Fast computation of distance estimators
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    Background: Some distance methods are among the most commonly used methods for reconstructing phylogenetic trees from sequence data. The input to a distance method is a distance m...
    Isaac Elias, Jens Lagergren
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    BMCBI
    2007
    57views more  BMCBI 2007»
    Large-scale integration of cancer microarray data identifies a robust common cancer signature
    14 years 18 days ago
    Large-scale integration of cancer microarray data identifies a robust common cancer signature
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    Lei Xu, Donald Geman, Raimond L. Winslow
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    BMCBI
    2007
    97views more  BMCBI 2007»
    Relating destabilizing regions to known functional sites in proteins
    14 years 18 days ago
    Relating destabilizing regions to known functional sites in proteins
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    Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
    Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
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    BMCBI
    2007
    122views more  BMCBI 2007»
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
    14 years 18 days ago
    TAP score: torsion angle propensity normalization applied to local protein structure evaluation
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    Background: Experimentally determined protein structures may contain errors and require validation. Conformational criteria based on the Ramachandran plot are mainly used to disti...
    Silvio C. E. Tosatto, Roberto Battistutta
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    BMCBI
    2007
    107views more  BMCBI 2007»
    A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL
    14 years 18 days ago
    A general and efficient method for estimating continuous IBD functions for use in genome scans for QTL
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    Background: Identity by descent (IBD) matrix estimation is a central component in mapping of Quantitative Trait Loci (QTL) using variance component models. A large number of algor...
    Francois Besnier, Örjan Carlborg
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    BMCBI
    2007
    112views more  BMCBI 2007»
    Selecting dissimilar genes for multi-class classification, an application in cancer subtyping
    14 years 18 days ago
    Selecting dissimilar genes for multi-class classification, an application in cancer subtyping
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    Background: Gene expression microarray is a powerful technology for genetic profiling diseases and their associated treatments. Such a process involves a key step of biomarker ide...
    Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipou...
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