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NAR
2011
194views Computer Vision» more  NAR 2011»
13 years 3 months ago
GreenPhylDB v2.0: comparative and functional genomics in plants
GreenPhylDB is a database designed for comparative and functional genomics based on complete genomes. Version 2 now contains sixteen full genomes of members of the plantae kingdom...
Mathieu Rouard, Valentin Guignon, Christelle Aluom...
NAR
2011
245views Computer Vision» more  NAR 2011»
13 years 3 months ago
The Comparative Toxicogenomics Database: update 2011
The Comparative Toxicogenomics Database (CTD) is a public resource that promotes understanding about the interaction of environmental chemicals with gene products, and their effec...
Allan Peter Davis, Benjamin L. King, Susan Mockus,...
NAR
2011
252views Computer Vision» more  NAR 2011»
13 years 3 months ago
BISC: Binary SubComplexes in proteins database
Binary subcomplexes in proteins database (BISC) is a new protein–protein interaction (PPI) database linking up the two communities most active in their characterization: structu...
Thomas Juettemann, Dietlind L. Gerloff
NAR
2011
197views Computer Vision» more  NAR 2011»
13 years 3 months ago
AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species
AmoebaDB (http://AmoebaDB.org) and MicrosporidiaDB (http://MicrosporidiaDB.org) are new functional genomic databases serving the amoebozoa and microsporidia research communities, ...
Cristina Aurrecoechea, Ana Barreto, John Brestelli...
NAR
2011
223views Computer Vision» more  NAR 2011»
13 years 3 months ago
KUPS: constructing datasets of interacting and non-interacting protein pairs with associated attributions
KUPS (The University of Kansas Proteomics Service) provides high-quality protein–protein interaction (PPI) data for researchers developing and evaluating computational models fo...
Xue-wen Chen, Jong Cheol Jeong, Patrick Dermyer
NAR
2011
277views Computer Vision» more  NAR 2011»
13 years 3 months ago
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection
The current 18th Database Issue of Nucleic Acids Research features descriptions of 96 new and 83 updated online databases covering various areas of molecular biology. It includes ...
Michael Y. Galperin, Guy Cochrane
NAR
2011
305views Computer Vision» more  NAR 2011»
13 years 3 months ago
CDD: a Conserved Domain Database for the functional annotation of proteins
NCBI’s Conserved Domain Database (CDD) is a resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from...
Aron Marchler-Bauer, Shennan Lu, John B. Anderson,...
NAR
2011
209views Computer Vision» more  NAR 2011»
13 years 3 months ago
CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowled
During the development of methods for cancer diagnosis and treatment, a vast amount of information is generated. Novel cancer target proteins have been identified and many compoun...
Jessica Ahmed, Thomas Meinel, Mathias Dunkel, Manu...
NAR
2011
188views Computer Vision» more  NAR 2011»
13 years 3 months ago
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
Various databases have harnessed the wealth of publicly available microarray data to address biological questions ranging from across-tissue differential expression to homologous ...
Matthew N. McCall, Karan Uppal, Harris A. Jaffee, ...
NAR
2011
158views Computer Vision» more  NAR 2011»
13 years 3 months ago
CPLA 1.0: an integrated database of protein lysine acetylation
Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Lo...