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CSB
2005
IEEE
135views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae
Usually, the functionality of a module of co-expressed genes is derived from enrichment within the module of a particular gene annotation category. The systematic setup of the che...
Theo A. Knijnenburg, Marcel J. T. Reinders, J. M. ...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking
Single-particle tracking provides a powerful technique for measuring dynamic cellular processes on the level of individual molecules. Much recent work has been devoted to using si...
Peter M. Kasson, Mark M. Davis, Axel T. Brüng...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Pathway Logic Helping Biologists Understand and Organize Pathway Information
Merrill Knapp, Linda Briesemeister, Steven Eker, P...
CSB
2005
IEEE
141views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Joint Genomic and Metabolomic Analysis of Toxic Dose-Response Experiments
A methodology has been implemented for analyzing microarray and NMR spectral data obtained from the same set of toxic-exposure dose-response experiments. The NMR spectra additiona...
Gary L. Jahns, Nicholas J. DelRaso, Mark P. Westri...
CSB
2005
IEEE
152views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Consensus Genetic Maps: A Graph Theoretic Approach
A genetic map is an ordering of genetic markers constructed from genetic linkage data for use in linkage studies and experimental design. While traditional methods have focused on...
Benjamin G. Jackson, Srinivas Aluru, Patrick S. Sc...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...
CSB
2005
IEEE
129views Bioinformatics» more  CSB 2005»
14 years 5 months ago
Minimal Marker Sets to Discriminate Among Seedlines
Raising seeds for biological experiments is prone to error; a careful experimenter will test in the lab to verify that plants are of the intended strain. Choosing a minimal set of...
Thomas C. Hudson, Ann E. Stapleton, Amy M. Curley