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BMCBI
2006
118views more  BMCBI 2006»
13 years 11 months ago
Exploration of biological network centralities with CentiBiN
Background: The elucidation of whole-cell regulatory, metabolic, interaction and other biological networks generates the need for a meaningful ranking of network elements. Central...
Björn H. Junker, Dirk Koschützki, Falk S...
BMCBI
2006
190views more  BMCBI 2006»
13 years 11 months ago
VANTED: A system for advanced data analysis and visualization in the context of biological networks
Background: Recent advances with high-throughput methods in life-science research have increased the need for automatized data analysis and visual exploration techniques. Sophisti...
Björn H. Junker, Christian Klukas, Falk Schre...
BMCBI
2006
137views more  BMCBI 2006»
13 years 11 months ago
Chaos game representation for comparison of whole genomes
Background: Chaos game representation of genome sequences has been used for visual representation of genome sequence patterns as well as alignment-free comparisons of sequences ba...
Jijoy Joseph, Roschen Sasikumar
BMCBI
2006
72views more  BMCBI 2006»
13 years 11 months ago
Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in c
Background: Protein-protein interactions have traditionally been studied on a small scale, using classical biochemical methods to investigate the proteins of interest. More recent...
Pall F. Jonsson, Tamara Cavanna, Daniel Zicha, Pau...
BMCBI
2006
112views more  BMCBI 2006»
13 years 11 months ago
Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
Background: Gene expression microarray experiments are expensive to conduct and guidelines for acceptable quality control at intermediate steps before and after the samples are hy...
Lesley Jones, Darlene R. Goldstein, Gareth P. Hugh...
BMCBI
2006
116views more  BMCBI 2006»
13 years 11 months ago
JColorGrid: software for the visualization of biological measurements
Background: Two-dimensional data colourings are an effective medium by which to represent three-dimensional data in two dimensions. Such "color-grid" representations hav...
Marcin P. Joachimiak, Jennifer L. Weissman, Barnab...
BMCBI
2006
81views more  BMCBI 2006»
13 years 11 months ago
Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs
Victor X. Jin, Gregory A. Singer, Francisco J. Ago...
BMCBI
2006
81views more  BMCBI 2006»
13 years 11 months ago
Lower expression of genes near microRNA in C. elegans germline
Hidenori Inaoka, Yutaka Fukuoka, Isaac S. Kohane
BMCBI
2006
174views more  BMCBI 2006»
13 years 11 months ago
CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays
Background: DNA copy number alterations are one of the main characteristics of the cancer cell karyotype and can contribute to the complex phenotype of these cells. These alterati...
Jing Huang, Wen Wei, Joyce Chen, Jane Zhang, Guoyi...