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    BMCBI
    2007
    155views more  BMCBI 2007»
    ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
    14 years 14 days ago
    ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
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    Background: In the last decade, techniques were established for the large scale genome-wide analysis of proteins, RNA, and metabolites, and database solutions have been developed ...
    Jan Hummel, Michaela Niemann, Stefanie Wienkoop, W...
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    BMCBI
    2007
    87views more  BMCBI 2007»
    A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
    14 years 14 days ago
    A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures
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    Background: Mitochondrial tRNAs have been the subject of study for structural biologists interested in their secondary structure characteristics, evolutionary biologists have rese...
    Konstantin Yu Popadin, Leila A. Mamirova, Fyodor A...
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    BMCBI
    2007
    110views more  BMCBI 2007»
    Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    14 years 14 days ago
    Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
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    Background: Affymetrix GeneChip technology enables the parallel observations of tens of thousands of genes. It is important that the probe set annotations are reliable so that bio...
    Maria A. Stalteri, Andrew P. Harrison
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    BMCBI
    2007
    141views more  BMCBI 2007»
    Artificial neural network models for prediction of intestinal permeability of oligopeptides
    14 years 14 days ago
    Artificial neural network models for prediction of intestinal permeability of oligopeptides
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    Background: Oral delivery is a highly desirable property for candidate drugs under development. Computational modeling could provide a quick and inexpensive way to assess the inte...
    Eunkyoung Jung, Junhyoung Kim, Minkyoung Kim, Dong...
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    BMCBI
    2007
    101views more  BMCBI 2007»
    Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors
    14 years 14 days ago
    Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors
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    Background: The size and magnitude of the metabolome, the ratio between individual metabolites and the response of metabolic networks is controlled by multiple cellular factors. A...
    Frank Kose, Jan Budczies, Matthias Holschneider, O...
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    BMCBI
    2007
    63views more  BMCBI 2007»
    Least-squares methods for identifying biochemical regulatory networks from noisy measurements
    14 years 14 days ago
    Least-squares methods for identifying biochemical regulatory networks from noisy measurements
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    Jongrae Kim, Declan G. Bates, Ian Postlethwaite, P...
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    BMCBI
    2007
    186views more  BMCBI 2007»
    Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
    14 years 14 days ago
    Modeling human cancer-related regulatory modules by GA-RNN hybrid algorithms
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    Background: Modeling cancer-related regulatory modules from gene expression profiling of cancer tissues is expected to contribute to our understanding of cancer biology as well as...
    Jung-Hsien Chiang, Shih-Yi Chao
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    BMCBI
    2007
    120views more  BMCBI 2007»
    Quantitative sequence-function relationships in proteins based on gene ontology
    14 years 14 days ago
    Quantitative sequence-function relationships in proteins based on gene ontology
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    Background: The relationship between divergence of amino-acid sequence and divergence of function among homologous proteins is complex. The assumption that homologs share function...
    Vineet Sangar, Daniel J. Blankenberg, Naomi Altman...
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    BMCBI
    2007
    217views more  BMCBI 2007»
    OntologyWidget - a reusable, embeddable widget for easily locating ontology terms
    14 years 14 days ago
    OntologyWidget - a reusable, embeddable widget for easily locating ontology terms
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    Background: Biomedical ontologies are being widely used to annotate biological data in a computer-accessible, consistent and well-defined manner. However, due to their size and co...
    Catherine Beauheim, Farrell Wymore, Michael Nitzbe...
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    BMCBI
    2007
    86views more  BMCBI 2007»
    Tandem mass spectrometry data quality assessment by self-convolution
    14 years 14 days ago
    Tandem mass spectrometry data quality assessment by self-convolution
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    Background: Many algorithms have been developed for deciphering the tandem mass spectrometry (MS) data sets. They can be essentially clustered into two classes. The first performs...
    Keng Wah Choo, Wai Mun Tham
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